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Gene name

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Reliability

Reliability

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Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

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Detectable

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Detectable

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PDLIM3
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    TISSUE

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    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

PDLIM3

Gene description

PDZ and LIM domain 3

Protein class

Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

5
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enhanced (skeletal muscle)
GTEx:Expressed in all
FANTOM5:Tissue enriched (skeletal muscle)

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in smooth and skeletal muscle.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Supported based on 1 antibody.
HPA004749
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Skeletal muscle

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (skeletal muscle)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (skeletal muscle)

GENE INFORMATION

Gene name

PDLIM3 (HGNC Symbol)

Synonyms

ALP

Description

PDZ and LIM domain 3 (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene contains a PDZ domain and a LIM domain, indicating that it may be involved in cytoskeletal assembly. In support of this, the encoded protein has been shown to bind the spectrin-like repeats of alpha-actinin-2 and to colocalize with alpha-actinin-2 at the Z lines of skeletal muscle. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. Aberrant alternative splicing of this gene may play a role in myotonic dystrophy. [provided by RefSeq, Apr 2012]

Chromosome

4

Cytoband

q35.1

Chromosome location (bp)

185500660 - 185535612

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000154553 (version 83.38)

Entrez gene

27295

UniProt

Q53GG5 (UniProt - Evidence at protein level)

neXtProt

NX_Q53GG5

Antibodypedia

PDLIM3 antibodies

PROTEIN BROWSER

PDLIM3-001
PDLIM3-002
PDLIM3-201
PDLIM3-202
PDLIM3-203

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

PDLIM3-001
ENSP00000284770
ENST00000284770
Q53GG5 [Direct mapping]
PDZ and LIM domain protein 3
Show all
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0007015 [actin filament organization]
GO:0007507 [heart development]
GO:0008092 [cytoskeletal protein binding]
GO:0008270 [zinc ion binding]
GO:0015629 [actin cytoskeleton]
GO:0030018 [Z disc]
Show all
364 aa
39.2 kDa
No 0
PDLIM3-002
ENSP00000284771
ENST00000284771
Q53GG5 [Direct mapping]
PDZ and LIM domain protein 3
Show all
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0008270 [zinc ion binding]
GO:0030018 [Z disc]
Show all
316 aa
34.3 kDa
No 0
PDLIM3-201
ENSP00000284767
ENST00000284767
A0A0A0MQY0 [Direct mapping]
PDZ and LIM domain protein 3
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0008270 [zinc ion binding]
Show all
276 aa
30.2 kDa
No 0
PDLIM3-202
ENSP00000481771
ENST00000620787
A0A087WYF8 [Direct mapping]
PDZ and LIM domain protein 3
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
197 aa
21.8 kDa
No 0
PDLIM3-203
ENSP00000486107
ENST00000629667
D6RAF1 [Direct mapping]
PDZ and LIM domain protein 3
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
42 aa
4.5 kDa
No 0

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