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PDLIM3

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:59.1TPM
GTEx:91.4RPKM
FANTOM5:107.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA004749

  

Endothelial cells

 Low  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

59.1
overview Male, age 54 Sample 1
TPM: 49
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 33.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 25.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 29.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 237.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 19.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 20.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 118.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 23.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 42
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 87.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 68.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

91.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 131.5
Samples: 149

Max RPKM: 645.6
Min RPKM: 47.2
Std RPKM: 56.5
Median RPKM: 128.5
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 645.6
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 220.8
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 215.8
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 213.5
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 213.4
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 207.2
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 203.1
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 199.4
GTEX-11ZTT-1626-SM-5EQKR 60-69 years, female 192.6
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 191.4
Show all
Colon - Transverse
RPKM: 60.8
Samples: 196

Max RPKM: 262.2
Min RPKM: 2.7
Std RPKM: 56.4
Median RPKM: 41.7
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 262.2
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 231.3
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 223.9
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 217.9
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 194.0
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 177.8
GTEX-11GSP-1626-SM-5986N 60-69 years, female 177.3
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 167.7
GTEX-XGQ4-1226-SM-4AT67 50-59 years, male 163.2
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 159.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

107.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 107.7
FF:10014-101C5 62,83,84 years, mixed 107.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.