Cell atlas - CHODL - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

CHODL

TISSUE

CELL

PATHOLOGY

CELL ATLAS RNA EXPRESSION

GENE/PROTEIN

Dictionary

Human cell

Please wait until image is loaded before changing channels

GENERAL INFORMATION
Gene name	CHODL
Gene description	Chondrolectin
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	7
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION
Summary
RNA cell category	Cell line enhanced (U-87 MG, U-266/84)
Protein evidence	Evidence at protein level
Main location	Not available

DATA RELIABILITY
Reliability score	Pending cell analysis.

ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Cell line enhanced (U-87 MG, U-266/84) Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

GENE INFORMATION
Gene name	CHODL (HGNC Symbol)
Synonyms	C21orf68, FLJ12627, MT75, PRED12
Description	Chondrolectin (HGNC Symbol)
Entrez gene summary	This gene encodes a type I membrane protein with a carbohydrate recognition domain characteristic of C-type lectins in its extracellular portion. In other proteins, this domain is involved in endocytosis of glycoproteins and exogenous sugar-bearing pathogens. This protein localizes predominantly to the perinuclear region. Several transcript variants encoding a few different isoforms have been found for this gene. [provided by RefSeq, Feb 2011]
Chromosome	21
Cytoband	q21.1
Chromosome location (bp)	17901263 - 18267373
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000154645 (version 83.38)
Entrez gene	140578
UniProt	Q9H9P2 (UniProt - Evidence at transcript level)
neXtProt	NX_Q9H9P2
Antibodypedia	CHODL antibodies

PROTEIN BROWSER

CHODL-001	CHODL-002	CHODL-003	CHODL-004	CHODL-005	CHODL-009	CHODL-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CHODL-001 ENSP00000299295 ENST00000299295	Q9H9P2 [Direct mapping] Chondrolectin Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005737 [cytoplasm] GO:0007517 [muscle organ development] GO:0010975 [regulation of neuron projection development] GO:0016021 [integral component of membrane] GO:0030246 [carbohydrate binding] GO:0048471 [perinuclear region of cytoplasm] Show all	273 aa 30.4 kDa	Yes	1
CHODL-002 ENSP00000382993 ENST00000400128	Q9H9P2 [Direct mapping] Chondrolectin Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005737 [cytoplasm] GO:0007517 [muscle organ development] GO:0016021 [integral component of membrane] GO:0030246 [carbohydrate binding] GO:0048471 [perinuclear region of cytoplasm] Show all	232 aa 26 kDa	No	1
CHODL-003 ENSP00000382996 ENST00000400131	A0A0C4DFS2 [Direct mapping] Chondrolectin Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all		236 aa 27.2 kDa	No	0
CHODL-004 ENSP00000383001 ENST00000400135	A0A0C4DFS2 [Direct mapping] Chondrolectin Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all		236 aa 27.2 kDa	No	0
CHODL-005 ENSP00000382992 ENST00000400127	Q9H9P2 [Direct mapping] Chondrolectin Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005737 [cytoplasm] GO:0007517 [muscle organ development] GO:0016021 [integral component of membrane] GO:0030246 [carbohydrate binding] GO:0048471 [perinuclear region of cytoplasm] Show all	232 aa 26 kDa	No	1
CHODL-009 ENSP00000443566 ENST00000543733	Q9H9P2 [Direct mapping] Chondrolectin Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005737 [cytoplasm] GO:0007517 [muscle organ development] GO:0016021 [integral component of membrane] GO:0030246 [carbohydrate binding] GO:0048471 [perinuclear region of cytoplasm] Show all	254 aa 28.4 kDa	No	1
CHODL-201 ENSP00000339975 ENST00000338326	A0A0C4DFS2 [Direct mapping] Chondrolectin Show all	Predicted intracellular proteins Show all		236 aa 27.2 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.