Tissue expression of CHODL - Summary - The Human Protein Atlas

We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.

CHODL

TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA
MOUSE BRAIN

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	CHODL
Gene description	Chondrolectin
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	7
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enhanced (spleen, testis)
GTEx:	Tissue enhanced (testis)
FANTOM5:	Tissue enriched (testis)

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic and membranous positivity mainly in testis.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data. Pending external verification.
Reliability score	Approved based on 1 antibody. HPA017282
	SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (spleen, testis)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (testis)
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Tissue enriched (testis)

GENE INFORMATION
Gene name	CHODL (HGNC Symbol)
Synonyms	C21orf68, FLJ12627, MT75, PRED12
Description	Chondrolectin (HGNC Symbol)
Entrez gene summary	This gene encodes a type I membrane protein with a carbohydrate recognition domain characteristic of C-type lectins in its extracellular portion. In other proteins, this domain is involved in endocytosis of glycoproteins and exogenous sugar-bearing pathogens. This protein localizes predominantly to the perinuclear region. Several transcript variants encoding a few different isoforms have been found for this gene. [provided by RefSeq, Feb 2011]
Chromosome	21
Cytoband	q21.1
Chromosome location (bp)	17901263 - 18267373
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000154645 (version 83.38)
Entrez gene	140578
UniProt	Q9H9P2 (UniProt - Evidence at transcript level)
neXtProt	NX_Q9H9P2
Antibodypedia	CHODL antibodies

PROTEIN BROWSER

CHODL-001	CHODL-002	CHODL-003	CHODL-004	CHODL-005	CHODL-009	CHODL-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CHODL-001 ENSP00000299295 ENST00000299295	Q9H9P2 [Direct mapping] Chondrolectin Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005737 [cytoplasm] GO:0007517 [muscle organ development] GO:0010975 [regulation of neuron projection development] GO:0016021 [integral component of membrane] GO:0030246 [carbohydrate binding] GO:0048471 [perinuclear region of cytoplasm] Show all	273 aa 30.4 kDa	Yes	1
CHODL-002 ENSP00000382993 ENST00000400128	Q9H9P2 [Direct mapping] Chondrolectin Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005737 [cytoplasm] GO:0007517 [muscle organ development] GO:0016021 [integral component of membrane] GO:0030246 [carbohydrate binding] GO:0048471 [perinuclear region of cytoplasm] Show all	232 aa 26 kDa	No	1
CHODL-003 ENSP00000382996 ENST00000400131	A0A0C4DFS2 [Direct mapping] Chondrolectin Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all		236 aa 27.2 kDa	No	0
CHODL-004 ENSP00000383001 ENST00000400135	A0A0C4DFS2 [Direct mapping] Chondrolectin Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all		236 aa 27.2 kDa	No	0
CHODL-005 ENSP00000382992 ENST00000400127	Q9H9P2 [Direct mapping] Chondrolectin Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005737 [cytoplasm] GO:0007517 [muscle organ development] GO:0016021 [integral component of membrane] GO:0030246 [carbohydrate binding] GO:0048471 [perinuclear region of cytoplasm] Show all	232 aa 26 kDa	No	1
CHODL-009 ENSP00000443566 ENST00000543733	Q9H9P2 [Direct mapping] Chondrolectin Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005737 [cytoplasm] GO:0007517 [muscle organ development] GO:0016021 [integral component of membrane] GO:0030246 [carbohydrate binding] GO:0048471 [perinuclear region of cytoplasm] Show all	254 aa 28.4 kDa	No	1
CHODL-201 ENSP00000339975 ENST00000338326	A0A0C4DFS2 [Direct mapping] Chondrolectin Show all	Predicted intracellular proteins Show all		236 aa 27.2 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.