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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:23.4TPM
GTEx:12.7RPKM
FANTOM5:26.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA035735

  

Antibody HPA035736

  

Antibody CAB015382

  

Antibody CAB075728

  

Antibody CAB075729

  

Endothelial cells

 Not detected   Medium   Low   Not detected   Not detected  

Glandular cells

 Not detected   Medium   High   Medium   Medium  

Peripheral nerve/ganglion

 Not detected   Low   Not detected   Not detected  
         
         
         

COLON - HPA RNA-seq

Average TPM

23.4
overview Male, age 54 Sample 1
TPM: 21.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 22.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 28.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 16.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 25.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 26.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 27.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 23.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 20.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 26.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 26.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 19.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 12.4
Samples: 149

Max RPKM: 28.9
Min RPKM: 6.2
Std RPKM: 3.4
Median RPKM: 11.8
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 28.9
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 27.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 25.7
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 19.9
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 19.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 19.7
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 19.0
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 18.4
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 17.9
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 17.1
Show all
Colon - Transverse
RPKM: 12.9
Samples: 196

Max RPKM: 27.0
Min RPKM: 5.3
Std RPKM: 3.4
Median RPKM: 12.3
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 27.0
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 24.3
GTEX-QMRM-1226-SM-447C6 50-59 years, male 23.6
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 22.8
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 22.7
GTEX-144GM-1226-SM-5LU52 20-29 years, male 22.4
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 22.3
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 22.1
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 21.6
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 20.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

26.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 26.0
FF:10014-101C5 62,83,84 years, mixed 26.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.