We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
IER5
  • TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:10.0TPM
GTEx:13.0RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glial cells:High
Neuronal cells:Not detected
Neuropil:Low
 

Antibody staining

Antibody HPA029894

 

Endothelial cells

Low  

Glial cells

High  

Neuronal cells

Not detected  

Neuropil

Low  
 
 
 

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

10.0

N/A Male, age 5 Sample 1
TPM: 8.2
overview Female, age 40 Sample 2
TPM: 11.8
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70 Sample 3
TPM: 10
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

13.0

GTEx sample id

Sample description

RPKM

Brain - Cortex
RPKM: 13.1
Samples: 114

Max RPKM: 42.5
Min RPKM: 3.4
Std RPKM: 6.0
Median RPKM: 12.7
GTEX-11WQK-3026-SM-5EQL6 50-59 years, male 42.5
GTEX-11OC5-0726-SM-5P9JK 60-69 years, male 36.4
GTEX-TSE9-3026-SM-3DB76 60-69 years, female 29.6
GTEX-X585-3026-SM-46MWF 50-59 years, male 28.2
GTEX-XOTO-3026-SM-4B65M 50-59 years, male 24.6
GTEX-13JVG-3126-SM-5L3FH 60-69 years, male 24.4
GTEX-WWYW-3126-SM-3NB39 50-59 years, female 22.4
GTEX-13SLX-3126-SM-5S2Q5 50-59 years, female 22.2
GTEX-117XS-3026-SM-5N9CA 60-69 years, male 20.9
GTEX-12WSH-3026-SM-5CVNI 50-59 years, male 20.3
GTEX-X4XX-3026-SM-3NMB2 60-69 years, male 18.3
GTEX-131YS-3126-SM-5KLYT 60-69 years, female 18.1
GTEX-11ONC-2926-SM-5P9JM 60-69 years, male 17.9
GTEX-13FXS-3126-SM-5J2NN 50-59 years, male 17.7
GTEX-145LS-3126-SM-5Q5BY 60-69 years, female 17.6
GTEX-14BMV-3026-SM-5S2PQ 50-59 years, male 17.6
GTEX-WL46-2926-SM-3LK82 50-59 years, male 17.4
GTEX-WVLH-3026-SM-3MJG9 50-59 years, male 17.1
GTEX-ZYFD-3026-SM-5E44C 50-59 years, male 17.0
GTEX-13NYS-3126-SM-5KLYV 60-69 years, male 16.9
GTEX-13NYC-2826-SM-5K7WR 60-69 years, male 16.6
GTEX-WZTO-2926-SM-3NM9I 40-49 years, male 16.0
GTEX-12126-1026-SM-5P9JJ 20-29 years, male 15.9
GTEX-12WSC-3026-SM-5GCNF 50-59 years, male 15.9
GTEX-145MH-3026-SM-5Q5DZ 50-59 years, male 15.8
GTEX-T6MN-2626-SM-32PMQ 50-59 years, male 15.8
GTEX-13OVJ-2826-SM-5L3GW 50-59 years, female 15.5
GTEX-11GSP-3226-SM-5986O 60-69 years, female 15.4
GTEX-13VXU-2926-SM-5LU5C 50-59 years, male 15.3
GTEX-NPJ8-1526-SM-2D7VU 40-49 years, male 15.3
GTEX-QVJO-1426-SM-2S1QY 60-69 years, female 15.3
GTEX-RNOR-2326-SM-2TF4I 50-59 years, female 15.3
GTEX-1128S-2726-SM-5H12C 60-69 years, female 15.2
GTEX-11DXY-3226-SM-5GIDE 60-69 years, male 15.2
GTEX-14ASI-3026-SM-5S2PN 60-69 years, male 15.2
GTEX-12ZZX-2926-SM-5GCOQ 40-49 years, female 15.1
GTEX-13OVH-3026-SM-5MR4N 70-79 years, male 15.1
GTEX-13O3O-3126-SM-5KM3H 60-69 years, female 15.0
GTEX-13OW6-3026-SM-5J2MI 50-59 years, male 14.8
GTEX-PVOW-2526-SM-2XCF7 40-49 years, male 14.5
GTEX-11GSO-2926-SM-5HL73 60-69 years, male 13.9
GTEX-12ZZZ-3026-SM-5BC67 60-69 years, male 13.8
GTEX-ZZPT-3026-SM-5GZXH 50-59 years, male 13.8
GTEX-145MG-3026-SM-5RQJA 50-59 years, male 13.6
GTEX-Y8DK-0826-SM-4TT3T 60-69 years, male 13.6
GTEX-11PRG-2926-SM-5987A 50-59 years, male 13.5
GTEX-13QIC-2926-SM-5J2NF 60-69 years, female 13.5
GTEX-145MF-2726-SM-5O995 50-59 years, male 13.5
GTEX-13OW8-2826-SM-5L3GC 60-69 years, male 13.4
GTEX-13PVQ-3026-SM-5SI93 50-59 years, male 13.3
GTEX-Z93S-2926-SM-57WB9 50-59 years, male 13.3
GTEX-1192X-3126-SM-5N9BY 50-59 years, male 13.2
GTEX-11ZUS-2926-SM-5FQSL 30-39 years, male 13.1
GTEX-11O72-2926-SM-5BC4V 40-49 years, male 13.0
GTEX-UTHO-3026-SM-3GAFB 60-69 years, male 13.0
GTEX-ZAJG-3126-SM-5HL9J 50-59 years, female 12.9
GTEX-ZUA1-3026-SM-59HJC 40-49 years, male 12.8
GTEX-11NUK-2926-SM-5A5MD 50-59 years, male 12.7
GTEX-132Q8-3026-SM-5PNVG 60-69 years, male 12.7
GTEX-1313W-3126-SM-5LZUI 50-59 years, female 12.6
GTEX-WHSE-3026-SM-3P5ZH 20-29 years, male 12.6
GTEX-YFC4-3126-SM-5PNV6 40-49 years, female 12.5
GTEX-YJ89-3026-SM-5IFJI 60-69 years, male 12.3
GTEX-13PL6-3126-SM-5LUAR 40-49 years, female 12.2
GTEX-ZVT3-3026-SM-5E43N 60-69 years, female 12.2
GTEX-Q2AG-2926-SM-2HMJ3 40-49 years, female 12.0
GTEX-12ZZY-3026-SM-5GCOU 60-69 years, male 11.5
GTEX-T2IS-3026-SM-32QPM 20-29 years, female 11.4
GTEX-13O3Q-2926-SM-5KM45 50-59 years, male 11.3
GTEX-ZAK1-3026-SM-5S2MJ 50-59 years, female 11.2
GTEX-13FLW-1426-SM-5K7YE 50-59 years, male 11.1
GTEX-14A5I-2926-SM-5Q5CQ 50-59 years, female 11.1
GTEX-144GL-3026-SM-5Q5CW 50-59 years, male 11.0
GTEX-1399T-3026-SM-5KLZC 60-69 years, male 10.8
GTEX-OXRN-2426-SM-2I5EQ 50-59 years, male 10.8
GTEX-XLM4-3026-SM-4AT6L 60-69 years, male 10.8
GTEX-Y111-2726-SM-4TT3N 50-59 years, male 10.7
GTEX-T5JC-2426-SM-3NMDB 20-29 years, male 10.5
GTEX-R55F-1326-SM-5S2V4 50-59 years, male 10.3
GTEX-111FC-3126-SM-5GZZ2 60-69 years, male 10.1
GTEX-QVUS-2826-SM-3GADB 60-69 years, female 10.0
GTEX-RU72-3026-SM-5SI7Y 50-59 years, female 9.8
GTEX-144FL-3026-SM-5O99C 50-59 years, male 9.6
GTEX-13IVO-2926-SM-5L3CZ 70-79 years, male 9.4
GTEX-12ZZW-2926-SM-5LZUP 50-59 years, male 9.3
GTEX-13NYB-3026-SM-5IJD7 40-49 years, male 9.3
GTEX-11GS4-3126-SM-5A5LH 60-69 years, male 9.2
GTEX-13S7M-3126-SM-5RQJQ 60-69 years, female 9.2
GTEX-NPJ7-2726-SM-2I3FT 60-69 years, female 8.1
GTEX-QDT8-2926-SM-32PKC 30-39 years, female 8.1
GTEX-QMR6-1426-SM-32PLA 50-59 years, male 8.1
GTEX-13X6J-3026-SM-5Q5CU 50-59 years, male 7.9
GTEX-11DXW-1126-SM-5H12Q 40-49 years, male 7.7
GTEX-1117F-3226-SM-5N9CT 60-69 years, female 7.6
GTEX-13FHP-3026-SM-5IJBS 50-59 years, male 7.6
GTEX-13FHO-3026-SM-5J1O9 60-69 years, male 7.5
GTEX-12WSD-3126-SM-5HL7P 60-69 years, female 7.4
GTEX-13JUV-2926-SM-5LZX7 40-49 years, female 7.3
GTEX-11EMC-3226-SM-5EGKW 60-69 years, female 7.2
GTEX-11EI6-3026-SM-5GZZO 60-69 years, male 7.1
GTEX-13OW7-3026-SM-5L3GY 50-59 years, male 7.1
GTEX-131XW-3126-SM-5LZUC 50-59 years, female 6.6
GTEX-ZE7O-3126-SM-5HL5X 50-59 years, female 6.6
GTEX-N7MT-1126-SM-5SI7V 60-69 years, female 6.4
GTEX-11OF3-2926-SM-5HL78 60-69 years, male 5.6
GTEX-139T8-1026-SM-5J2MC 60-69 years, male 5.5
GTEX-147GR-3026-SM-5S2ML 60-69 years, male 5.5
GTEX-11TTK-2926-SM-5PNYP 60-69 years, female 5.2
GTEX-13X6K-2926-SM-5Q5D5 60-69 years, female 4.9
GTEX-PWO3-0926-SM-2I5EY 60-69 years, female 4.7
GTEX-11NV4-2126-SM-5N9DS 60-69 years, male 4.6
GTEX-1445S-3026-SM-5O9BR 60-69 years, male 4.3
GTEX-13G51-3026-SM-5IJB8 60-69 years, male 4.2
GTEX-12WSA-2926-SM-5EQ4D 60-69 years, male 3.4
Show all
Brain - Frontal Cortex (BA9)
RPKM: 13.0
Samples: 108

Max RPKM: 56.7
Min RPKM: 2.3
Std RPKM: 7.7
Median RPKM: 12.3
GTEX-13N2G-0011-R10a-SM-5MR34 60-69 years, male 56.7
GTEX-11WQK-0011-R10a-SM-5BC6R 50-59 years, male 44.4
GTEX-13N1W-0011-R10b-SM-5MR4H 70-79 years, male 38.9
GTEX-13SLX-0011-R10a-SM-5P9HV 50-59 years, female 29.1
GTEX-NL3H-0011-R10A-SM-2I3E9 60-69 years, male 27.0
GTEX-12WSH-0011-R10a-SM-5LZUS 50-59 years, male 25.7
GTEX-13NYS-0011-R10a-SM-5MR4S 60-69 years, male 22.5
GTEX-TSE9-0011-R10A-SM-3DB7O 60-69 years, female 22.2
GTEX-X4XX-0011-R10B-SM-46MWO 60-69 years, male 20.0
GTEX-X4EP-0011-R10B-SM-4QASJ 60-69 years, female 19.7
GTEX-NPJ8-0011-R10A-SM-2YUMO 40-49 years, male 19.4
GTEX-X585-0011-R10A-SM-46MUY 50-59 years, male 18.7
GTEX-145MG-0011-R10a-SM-5PNWG 50-59 years, male 18.4
GTEX-WWYW-0011-R10A-SM-3NB35 50-59 years, female 18.4
GTEX-14ASI-0011-R10b-SM-5S2VZ 60-69 years, male 18.3
GTEX-WL46-0011-R10A-SM-3MJFQ 50-59 years, male 18.3
GTEX-T6MN-0011-R10A-SM-32QP7 50-59 years, male 18.1
GTEX-12WSF-0011-R10a-SM-5LZVH 70-79 years, male 17.8
GTEX-12ZZX-0011-R10b-SM-5DUWK 40-49 years, female 17.8
GTEX-ZF28-0011-R10a-SM-4WWEH 60-69 years, male 17.7
GTEX-13OW7-0011-R10a-SM-5L3H3 50-59 years, male 17.1
GTEX-13S7M-0011-R10b-SM-5PNZB 60-69 years, female 16.3
GTEX-Q2AG-0011-R10A-SM-2HMLA 40-49 years, female 16.3
GTEX-1313W-0011-R10b-SM-5DUXA 50-59 years, female 15.8
GTEX-WVLH-0011-R10A-SM-3MJFM 50-59 years, male 15.5
GTEX-13O3O-0011-R10a-SM-5LUA9 60-69 years, female 15.3
GTEX-N7MS-0011-R10A-SM-2HMJK 60-69 years, male 15.1
GTEX-13CZV-0011-R10b-SM-5LZYD 60-69 years, male 14.9
GTEX-13FLV-0011-R10b-SM-5LZZ2 50-59 years, male 14.8
GTEX-Y8DK-0011-R10A-SM-4SOK1 60-69 years, male 14.8
GTEX-12ZZY-0011-R10b-SM-5HL7W 60-69 years, male 14.4
GTEX-14BIN-0011-R10a-SM-5S2UA 50-59 years, female 14.4
GTEX-13JVG-0011-R10b-SM-5KM2P 60-69 years, male 14.3
GTEX-13O3Q-0011-R10b-SM-5KM39 50-59 years, male 14.2
GTEX-12WSE-0011-R10b-SM-5P9JV 20-29 years, male 14.0
GTEX-131YS-0011-R10b-SM-5EQ5N 60-69 years, female 14.0
GTEX-13QIC-0011-R10a-SM-5O9C7 60-69 years, female 14.0
GTEX-147GR-0011-R10b-SM-5S2UM 60-69 years, male 13.9
GTEX-11GSP-0011-R10a-SM-5NQ7J 60-69 years, female 13.8
GTEX-13RTJ-0011-R10b-SM-5O9CW 60-69 years, male 13.6
GTEX-OXRO-0011-R10A-SM-2I5EH 60-69 years, female 13.6
GTEX-13OW6-0011-R10a-SM-5L3HE 50-59 years, male 13.5
GTEX-WZTO-0011-R10B-SM-4E3KB 40-49 years, male 13.5
GTEX-YFC4-0011-R10a-SM-4SOK5 40-49 years, female 13.5
GTEX-13FXS-0011-R10a-SM-5J2MA 50-59 years, male 13.4
GTEX-12WSM-0011-R10a-SM-5DUWV 60-69 years, male 13.2
GTEX-131XH-0011-R10a-SM-5EGLJ 50-59 years, male 13.1
GTEX-13OVJ-0011-R10b-SM-5L3HT 50-59 years, female 13.0
GTEX-145MH-0011-R10b-SM-5PNUK 50-59 years, male 12.9
GTEX-YJ89-0011-R10a-SM-4SOK9 60-69 years, male 12.9
GTEX-12ZZZ-0011-R10a-SM-5P9HC 60-69 years, male 12.7
GTEX-145LS-0011-R10a-SM-5PNUQ 60-69 years, female 12.6
GTEX-13QJC-0011-R10a-SM-5SI63 60-69 years, female 12.5
GTEX-S7SE-0011-R10A-SM-2XCDF 50-59 years, male 12.4
GTEX-12WSC-0011-R10a-SM-5GU57 50-59 years, male 12.2
GTEX-13X6J-0011-R10b-SM-5PNWA 50-59 years, male 12.2
GTEX-14BIL-0011-R10a-SM-5SI75 50-59 years, male 12.2
GTEX-13OW8-0011-R10a-SM-5L3H6 60-69 years, male 12.1
GTEX-13X6K-0011-R10a-SM-5P9JR 60-69 years, female 11.8
GTEX-13FLW-0011-R10b-SM-5LZZF 50-59 years, male 11.7
GTEX-13JUV-0011-R10b-SM-5LZXR 40-49 years, female 11.5
GTEX-T5JC-0011-R10A-SM-32PM2 20-29 years, male 11.5
GTEX-QVJO-0011-R10A-SM-2S1QJ 60-69 years, female 11.4
GTEX-132Q8-0011-R10b-SM-5DUWZ 60-69 years, male 11.2
GTEX-NPJ7-0011-R10A-SM-2I3E5 60-69 years, female 11.1
GTEX-XLM4-0011-R10A-SM-4AT5P 60-69 years, male 11.0
GTEX-11H98-0011-R10b-SM-5NQ98 50-59 years, male 10.7
GTEX-ZVZQ-0011-R10b-SM-51MRT 60-69 years, female 10.6
GTEX-12126-0011-R10b-SM-5BC6T 20-29 years, male 9.9
GTEX-ZDXO-0011-R10a-SM-4WWD8 60-69 years, male 9.7
GTEX-OXRN-0011-R10A-SM-2I5GC 50-59 years, male 9.6
GTEX-145LU-0011-R10a-SM-5PNWJ 50-59 years, male 9.5
GTEX-13NYB-0011-R10a-SM-5KM43 40-49 years, male 9.4
GTEX-N7MT-0011-R10A-SM-2I3E1 60-69 years, female 9.2
GTEX-QMR6-0011-R10A-SM-32PKO 50-59 years, male 9.1
GTEX-13X6I-0011-R10a-SM-5PNWI 60-69 years, male 8.9
GTEX-11ZUS-0011-R10b-SM-5BC79 30-39 years, male 8.7
GTEX-13OVL-0011-R10a-SM-5L3GS 50-59 years, male 8.7
GTEX-ZAB4-0011-R10a-SM-4SOKH 40-49 years, male 8.4
GTEX-ZVT3-0011-R10b-SM-57WB6 60-69 years, female 8.2
GTEX-13FTZ-0011-R10b-SM-5KLZS 60-69 years, male 8.1
GTEX-Z93S-0011-R10a-SM-4RGNM 50-59 years, male 8.1
GTEX-ZUA1-0011-R10a-SM-51MT6 40-49 years, male 8.1
GTEX-QVUS-0011-R10A-SM-3GIK3 60-69 years, female 7.6
GTEX-X261-0011-R10B-SM-4E3JT 50-59 years, male 7.6
GTEX-11WQC-0011-R10a-SM-57WCT 60-69 years, male 7.5
GTEX-13FHO-0011-R10b-SM-5J2MM 60-69 years, male 7.5
GTEX-QDT8-0011-R10A-SM-32PKG 30-39 years, female 7.5
GTEX-13IVO-0011-R10a-SM-5LZY3 70-79 years, male 7.4
GTEX-P44H-0011-R10A-SM-2XCEK 40-49 years, male 7.4
GTEX-13G51-0011-R10b-SM-5LZYF 60-69 years, male 7.0
GTEX-NL4W-0011-R10A-SM-2I3DY 50-59 years, male 6.9
GTEX-RVPU-0011-R10A-SM-2XCAH 50-59 years, male 6.9
GTEX-13NZA-0011-R10b-SM-5KM54 60-69 years, male 6.8
GTEX-13SLW-0011-R10a-SM-5S2UI 70-79 years, male 6.8
GTEX-147F4-0011-R10b-SM-5S2WC 50-59 years, male 6.3
GTEX-139TS-0011-R10a-SM-5K7TU 60-69 years, male 5.6
GTEX-ZV68-0011-R10a-SM-51MT7 50-59 years, female 5.3
GTEX-XMD1-0011-R10A-SM-4AT4A 60-69 years, male 5.1
GTEX-ZXG5-0011-R10a-SM-57WDD 60-69 years, male 4.9
GTEX-12WSD-0011-R10b-SM-5GU79 60-69 years, female 4.7
GTEX-12ZZW-0011-R10b-SM-5HL9X 50-59 years, male 4.7
GTEX-1477Z-0011-R10b-SM-5S2RF 60-69 years, male 4.1
GTEX-12WSA-0011-R10b-SM-5P9ET 60-69 years, male 3.1
GTEX-1445S-0011-R10a-SM-5PNWB 60-69 years, male 3.1
GTEX-14753-0011-R10b-SM-5S2WE 60-69 years, male 3.1
GTEX-ZE7O-0011-R10a-SM-57WAZ 50-59 years, female 2.9
GTEX-131XW-0011-R10a-SM-5DUVA 50-59 years, female 2.3
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.