Tissue expression of MSX1 - Staining in colon

COLON - Expression summary

Protein expression

RNA expression

HPA:	0.6	TPM
GTEx:	0.9	RPKM
FANTOM5:	2.3	Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:	Not detected
Glandular cells:	Not detected
Peripheral nerve/ganglion:	Not detected

Antibody staining	Antibody HPA073604	Antibody CAB026198
Endothelial cells	Not detected	Not detected
Glandular cells	Not detected	Not detected
Peripheral nerve/ganglion	Not detected	Not detected

COLON - HPA RNA-seq

Average TPM	0.6

Male, age 54

Sample 1
TPM: 0.4

Cell types%

Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25

Female, age 57

Sample 2
TPM: 0.4

Cell types%

Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55

Male, age 80

Sample 3
TPM: 0.4

Cell types%

Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40

Male, age 68

Sample 4
TPM: 2.1

Cell types%

Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55

Female, age 68

Sample 5
TPM: 0.2

Cell types%

Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70

Female, age 61

Sample 6
TPM: 0.7

Cell types%

Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30

Male, age 80

Sample 7
TPM: 0.2

Cell types%

Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

Female, age 78

Sample 8
TPM: 0.4

Cell types%

Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50

Male, age 84

Sample 9
TPM: 0.8

Cell types%

Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35

Male, age 80

Sample 10
TPM: 0.2

Cell types%

Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45

Female, age 78

Sample 11
TPM: 0.5

Cell types%

Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55

Female, age 69

Sample 12
TPM: 0.5

Cell types%

Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45

Female, age 72

Sample 13
TPM: 1.7

Cell types%

Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM	0.9

GTEx sample id

Sample description

RPKM

Colon - Sigmoid
RPKM: 1.1

Samples: 149

Max RPKM: 7.0
Min RPKM: 0.1
Std RPKM: 0.8
Median RPKM: 0.9

GTEX-14C39-1626-SM-5S2P4

40-49 years, male

7.0

GTEX-ZTSS-1226-SM-51MSZ

40-49 years, male

3.8

GTEX-14BMU-1326-SM-5RQIH

20-29 years, female

3.4

GTEX-ZLFU-1426-SM-4WWEU

40-49 years, male

3.4

GTEX-WI4N-2226-SM-4OOS9

40-49 years, female

3.2

GTEX-13X6I-2726-SM-5Q5ET

60-69 years, male

3.1

GTEX-145LS-2926-SM-5O99G

60-69 years, female

2.8

GTEX-ZDTS-2726-SM-5L3E2

60-69 years, male

2.8

GTEX-ZAJG-2626-SM-5S2NU

50-59 years, female

2.5

GTEX-13OW6-2226-SM-5N9FL

50-59 years, male

2.3

Show all

Colon - Transverse
RPKM: 0.8

Samples: 196

Max RPKM: 11.9
Min RPKM: 0.0
Std RPKM: 1.2
Median RPKM: 0.5

GTEX-13W3W-2126-SM-5K7UX

60-69 years, female

11.9

GTEX-13OVG-1426-SM-5K7VP

60-69 years, male

9.7

GTEX-14C38-2626-SM-5RQI4

50-59 years, male

6.1

GTEX-14ICL-1226-SM-5S2RD

30-39 years, male

3.4

GTEX-11EQ9-1426-SM-5987G

30-39 years, male

3.3

GTEX-12ZZZ-2426-SM-5GCNN

60-69 years, male

2.5

GTEX-111VG-2226-SM-5N9DU

60-69 years, male

2.3

GTEX-ZYVF-2826-SM-5GIDK

50-59 years, female

2.2

GTEX-11WQK-2126-SM-5EQME

50-59 years, male

2.0

GTEX-148VJ-2626-SM-5QGPI

70-79 years, male

2.0

Show all

COLON - FANTOM5 CAGE

Average Tags Per Million	2.3

FANTOM5 sample id

Sample description

Tags Per Million

Colon
Tags Per Million: 2.3

FF:10014-101C5

62,83,84 years, mixed

2.3