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AGGF1

COLON - Expression summary

RNA expression
HPA:11.3TPM
GTEx:4.9RPKM
FANTOM5:34.8Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA043500

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

11.3
overview Male, age 54 Sample 1
TPM: 12.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 11.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 11.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 14.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.6
Samples: 149

Max RPKM: 7.5
Min RPKM: 2.5
Std RPKM: 0.8
Median RPKM: 4.6
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 7.5
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 6.8
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 6.5
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 6.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 6.1
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 6.1
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 6.0
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 6.0
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 6.0
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 5.9
Show all
Colon - Transverse
RPKM: 5.1
Samples: 196

Max RPKM: 7.5
Min RPKM: 1.6
Std RPKM: 0.9
Median RPKM: 5.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 7.5
GTEX-P4PP-1426-SM-3NM9L 30-39 years, female 7.2
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 7.0
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 7.0
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 6.9
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 6.9
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 6.8
GTEX-OIZH-1426-SM-3NB1O 50-59 years, male 6.8
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 6.7
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 6.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

34.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 34.8
FF:10014-101C5 62,83,84 years, mixed 34.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.