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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:18.8TPM
GTEx:33.3RPKM
FANTOM5:48.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA031621

  

Antibody CAB032539

  

Endothelial cells

 Low   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium  
      
   
   

COLON - HPA RNA-seq

Average TPM

18.8
overview Male, age 54 Sample 1
TPM: 24.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 24.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 18.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 13.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 24
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 20.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 28.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 20.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

33.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 29.9
Samples: 149

Max RPKM: 50.7
Min RPKM: 15.4
Std RPKM: 7.2
Median RPKM: 28.5
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 50.7
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 49.9
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 48.3
GTEX-V955-1726-SM-4JBHF 60-69 years, male 46.9
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 46.8
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 44.9
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 44.8
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 43.4
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 42.7
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 42.0
Show all
Colon - Transverse
RPKM: 36.0
Samples: 196

Max RPKM: 62.5
Min RPKM: 6.3
Std RPKM: 9.6
Median RPKM: 36.1
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 62.5
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 60.6
GTEX-PLZ5-1126-SM-3P613 50-59 years, male 56.7
GTEX-S4P3-1226-SM-4AD4Y 50-59 years, female 55.9
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 54.6
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 52.8
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 51.9
GTEX-13111-0726-SM-5DUVE 50-59 years, male 50.7
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 50.1
GTEX-QCQG-1626-SM-48U26 50-59 years, female 49.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

48.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 48.4
FF:10014-101C5 62,83,84 years, mixed 48.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.