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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:66.8TPM
GTEx:0.5RPKM
FANTOM5:1054.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA035360

  

Antibody HPA038713

  

Antibody HPA052451

  

Endothelial cells

 High   Not detected   Not detected  

Glandular cells

 High   Not detected   Low  

Peripheral nerve/ganglion

 Medium   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

66.8
overview Male, age 54 Sample 1
TPM: 26.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 39.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 60.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 268.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 48.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 22.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 38.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 43.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 100.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 27.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 83.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 97.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.2
Samples: 149

Max RPKM: 1.0
Min RPKM: 0.0
Std RPKM: 0.2
Median RPKM: 0.1
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 1.0
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 0.9
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 0.8
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 0.7
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 0.7
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 0.7
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 0.6
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 0.6
GTEX-145MO-2626-SM-5QGPD 60-69 years, male 0.6
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 0.6
Show all
Colon - Transverse
RPKM: 0.7
Samples: 196

Max RPKM: 3.5
Min RPKM: 0.0
Std RPKM: 0.7
Median RPKM: 0.5
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 3.5
GTEX-13D11-0826-SM-5KLZJ 50-59 years, female 3.4
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 2.9
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 2.9
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 2.6
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 2.5
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 2.4
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 2.3
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 2.3
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 2.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1054.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1054.2
FF:10014-101C5 62,83,84 years, mixed 1054.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.