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SDC2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:44.2TPM
GTEx:25.8RPKM
FANTOM5:80.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
 

Antibody staining

Antibody CAB025123

  

Endothelial cells

 Medium  

Glandular cells

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

44.2
overview Male, age 54 Sample 1
TPM: 30.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 43.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 20.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 47.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 62.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 97.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 33.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 28.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 64.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 24.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 39.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 49.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 31.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

25.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 33.7
Samples: 149

Max RPKM: 64.5
Min RPKM: 15.3
Std RPKM: 8.4
Median RPKM: 33.5
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 64.5
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 58.2
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 55.8
GTEX-ZE7O-2626-SM-51MSS 50-59 years, female 55.3
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 51.7
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 49.1
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 47.6
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 47.4
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 47.4
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 47.1
Show all
Colon - Transverse
RPKM: 19.8
Samples: 196

Max RPKM: 69.3
Min RPKM: 4.1
Std RPKM: 13.8
Median RPKM: 14.4
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 69.3
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 66.8
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 66.4
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 57.8
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 56.2
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 51.9
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 51.7
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 51.6
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 51.4
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 48.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

80.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 80.4
FF:10014-101C5 62,83,84 years, mixed 80.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.