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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:171.4TPM
GTEx:36.5RPKM
FANTOM5:114.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA046705

  

Antibody HPA051998

  

Endothelial cells

 Low   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Not detected   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

171.4
overview Male, age 54 Sample 1
TPM: 144
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 136.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 197.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 225.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 59.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 123
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 236.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 185
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 120.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 312.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 217.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 183
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 87
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

36.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 19.3
Samples: 149

Max RPKM: 31.5
Min RPKM: 8.6
Std RPKM: 4.3
Median RPKM: 19.0
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 31.5
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 29.2
GTEX-XBED-1726-SM-47JYO 60-69 years, male 28.5
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 27.8
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 27.6
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 27.0
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 26.7
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 26.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 26.4
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 26.2
Show all
Colon - Transverse
RPKM: 49.6
Samples: 196

Max RPKM: 125.5
Min RPKM: 4.7
Std RPKM: 25.4
Median RPKM: 49.6
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 125.5
GTEX-U3ZN-2126-SM-4DXU1 30-39 years, female 106.2
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 98.9
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 96.8
GTEX-12BJ1-2126-SM-5BC5O 60-69 years, male 96.4
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 94.1
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 94.1
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 93.7
GTEX-YB5E-1626-SM-5IFIQ 40-49 years, male 91.9
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 90.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

114.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 114.0
FF:10014-101C5 62,83,84 years, mixed 114.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.