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CSPG4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:5.6TPM
GTEx:31.4RPKM
FANTOM5:64.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA002951

  

Antibody HPA042785

  

Antibody CAB016189

  

Endothelial cells

 Low   Medium   Medium  

Glandular cells

 Medium   High   High  

Peripheral nerve/ganglion

 Medium   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

5.6
overview Male, age 54 Sample 1
TPM: 7.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 9.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

31.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 44.4
Samples: 149

Max RPKM: 90.9
Min RPKM: 19.0
Std RPKM: 10.7
Median RPKM: 43.4
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 90.9
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 78.7
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 72.2
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 69.8
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 66.8
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 65.7
GTEX-WFG7-1626-SM-4LVMF 20-29 years, male 64.4
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 64.0
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 61.9
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 60.9
Show all
Colon - Transverse
RPKM: 21.4
Samples: 196

Max RPKM: 117.6
Min RPKM: 0.9
Std RPKM: 20.1
Median RPKM: 14.6
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 117.6
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 81.5
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 80.2
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 77.0
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 67.9
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 67.4
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 66.1
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 63.8
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 59.9
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 56.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

64.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 64.1
FF:10014-101C5 62,83,84 years, mixed 64.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.