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PSMD1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:37.9TPM
GTEx:25.1RPKM
FANTOM5:78.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA036736

  

Antibody HPA036737

  

Antibody CAB021092

  

Endothelial cells

 Medium   Medium   Medium  

Glandular cells

 Medium   High   Medium  

Peripheral nerve/ganglion

 High   Medium   High  
     
     
     

COLON - HPA RNA-seq

Average TPM

37.9
overview Male, age 54 Sample 1
TPM: 29.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 28
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 35.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 35.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 33
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 44.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 44.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 40
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 41
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 48
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 43.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 42
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

25.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 24.4
Samples: 149

Max RPKM: 42.3
Min RPKM: 11.2
Std RPKM: 5.4
Median RPKM: 25.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 42.3
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 36.3
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 36.0
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 35.4
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 34.8
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 33.6
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 33.4
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 33.1
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 32.6
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 32.4
Show all
Colon - Transverse
RPKM: 25.6
Samples: 196

Max RPKM: 63.0
Min RPKM: 11.6
Std RPKM: 6.3
Median RPKM: 25.0
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 63.0
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 46.0
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 45.9
GTEX-144GN-1126-SM-5LU33 50-59 years, male 41.8
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 40.2
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 39.4
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 39.1
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 38.5
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 37.4
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 36.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

78.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 78.6
FF:10014-101C5 62,83,84 years, mixed 78.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.