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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:33.3TPM
GTEx:44.5RPKM
FANTOM5:97.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:Low
 
 

Antibody staining

Antibody HPA007084

  

Antibody HPA008903

  

Antibody CAB016132

  

Endothelial cells

 High   Medium   Medium  

Glandular cells

 High   High   High  

Peripheral nerve/ganglion

 Medium  
        
     
     
     

COLON - HPA RNA-seq

Average TPM

33.3
overview Male, age 54 Sample 1
TPM: 37.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 31.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 26.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 33.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 23.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 40.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 30.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 33.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 34.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 29.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 39.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 40.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 31.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

44.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 43.9
Samples: 149

Max RPKM: 67.5
Min RPKM: 20.3
Std RPKM: 8.0
Median RPKM: 42.9
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 67.5
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 65.3
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 63.7
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 62.6
GTEX-111CU-1226-SM-5EGIN 50-59 years, male 61.8
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 60.3
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 59.9
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 59.4
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 58.9
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 58.2
Show all
Colon - Transverse
RPKM: 45.0
Samples: 196

Max RPKM: 68.2
Min RPKM: 21.4
Std RPKM: 6.2
Median RPKM: 44.9
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 68.2
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 67.7
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 62.1
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 59.0
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 56.4
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 56.4
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 56.2
GTEX-117YX-0826-SM-5H11J 50-59 years, male 54.2
GTEX-ZTSS-1126-SM-5985O 40-49 years, male 53.6
GTEX-RM2N-0926-SM-48FD1 50-59 years, male 53.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

97.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 97.8
FF:10014-101C5 62,83,84 years, mixed 97.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.