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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:6.4TPM
GTEx:2.9RPKM
FANTOM5:31.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA027730

  

Antibody CAB009495

  

Endothelial cells

 Medium   Low  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

6.4
overview Male, age 54 Sample 1
TPM: 8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 6.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 6.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 6.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.9
Samples: 149

Max RPKM: 5.2
Min RPKM: 1.0
Std RPKM: 0.6
Median RPKM: 1.9
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 5.2
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 4.7
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 4.1
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 3.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 3.5
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 3.4
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 3.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 3.1
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 2.7
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 2.7
Show all
Colon - Transverse
RPKM: 3.7
Samples: 196

Max RPKM: 31.7
Min RPKM: 1.2
Std RPKM: 2.6
Median RPKM: 3.2
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 31.7
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 15.2
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 10.3
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 8.1
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 8.1
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 8.1
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 7.8
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 7.4
GTEX-13FTW-1826-SM-5IJEN 40-49 years, male 7.1
GTEX-WFON-1426-SM-4LVMT 40-49 years, male 7.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

31.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 31.2
FF:10014-101C5 62,83,84 years, mixed 31.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.