Fields »
ABOUT
HELP
BLOG
TSHZ1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:11.1TPM
GTEx:10.5RPKM
FANTOM5:83.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
 

Antibody staining

Antibody HPA006982

  

Endothelial cells

 High  

Glandular cells

 High  
 

COLON - HPA RNA-seq

Average TPM

11.1
overview Male, age 54 Sample 1
TPM: 15.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 13.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 9.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 13.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 12.7
Samples: 149

Max RPKM: 25.1
Min RPKM: 3.0
Std RPKM: 4.1
Median RPKM: 12.3
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 25.1
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 23.7
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 23.3
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 22.4
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 21.7
GTEX-13111-1926-SM-5GCOL 50-59 years, male 21.6
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 21.6
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 20.8
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 19.3
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 19.1
Show all
Colon - Transverse
RPKM: 8.8
Samples: 196

Max RPKM: 21.9
Min RPKM: 3.3
Std RPKM: 3.8
Median RPKM: 7.7
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 21.9
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 20.9
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 19.8
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 19.7
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 19.0
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 18.7
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 17.6
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 17.4
GTEX-S341-1426-SM-4AD6U 40-49 years, female 17.1
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 17.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

83.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 83.4
FF:10014-101C5 62,83,84 years, mixed 83.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.