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COA4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:37.5TPM
GTEx:12.2RPKM
FANTOM5:52.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA040126

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

37.5
overview Male, age 54 Sample 1
TPM: 42.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 40.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 42.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 37.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 36
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 38.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 33.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 37.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 29.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 41.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 37.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 37.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 33.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.9
Samples: 149

Max RPKM: 21.5
Min RPKM: 7.3
Std RPKM: 2.0
Median RPKM: 10.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 21.5
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 18.5
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 16.3
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 16.0
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 15.9
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 15.2
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 14.6
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 14.5
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 14.4
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 14.2
Show all
Colon - Transverse
RPKM: 13.1
Samples: 196

Max RPKM: 23.0
Min RPKM: 4.3
Std RPKM: 2.9
Median RPKM: 12.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 23.0
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 22.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 21.1
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 20.5
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 19.7
GTEX-QMRM-1226-SM-447C6 50-59 years, male 19.6
GTEX-1128S-1626-SM-5H12O 60-69 years, female 19.3
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 19.2
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 18.8
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 18.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

52.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 52.9
FF:10014-101C5 62,83,84 years, mixed 52.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.