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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.3TPM
GTEx:15.3RPKM
FANTOM5:20.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA024513

  

Antibody HPA024522

  

Endothelial cells

 Not detected   High  

Glandular cells

 High   Medium  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

13.3
overview Male, age 54 Sample 1
TPM: 14.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 13.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 11.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 14.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 11.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 13.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

15.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.3
Samples: 149

Max RPKM: 39.2
Min RPKM: 7.1
Std RPKM: 5.8
Median RPKM: 18.0
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 39.2
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 35.2
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 34.5
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 34.1
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 33.5
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 31.1
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 29.3
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 28.9
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 27.4
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 27.3
Show all
Colon - Transverse
RPKM: 13.0
Samples: 196

Max RPKM: 36.2
Min RPKM: 4.5
Std RPKM: 5.9
Median RPKM: 10.8
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 36.2
GTEX-S341-1426-SM-4AD6U 40-49 years, female 35.0
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 33.2
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 30.4
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 30.2
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 30.2
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 28.7
GTEX-117YX-0826-SM-5H11J 50-59 years, male 26.0
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 26.0
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 24.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

20.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 20.7
FF:10014-101C5 62,83,84 years, mixed 20.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.