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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.1TPM
GTEx:0.3RPKM
FANTOM5:11.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA015858

  

Antibody HPA029579

  

Endothelial cells

 Medium   Low  

Glandular cells

 High   Not detected  

Peripheral nerve/ganglion

 Medium  
      
   
   

COLON - HPA RNA-seq

Average TPM

2.1
overview Male, age 54 Sample 1
TPM: 3.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.1
Samples: 149

Max RPKM: 0.4
Min RPKM: 0.0
Std RPKM: 0.0
Median RPKM: 0.1
GTEX-12696-1926-SM-5EGJT 60-69 years, male 0.4
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 0.4
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 0.3
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 0.3
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 0.3
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 0.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 0.3
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 0.3
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 0.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 0.3
Show all
Colon - Transverse
RPKM: 0.4
Samples: 196

Max RPKM: 1.1
Min RPKM: 0.0
Std RPKM: 0.2
Median RPKM: 0.4
GTEX-YB5E-1626-SM-5IFIQ 40-49 years, male 1.1
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 1.0
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 1.0
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 1.0
GTEX-R55G-1226-SM-48FDC 40-49 years, female 1.0
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 1.0
GTEX-13O21-2426-SM-5MR4A 50-59 years, male 0.9
GTEX-13QBU-1826-SM-5IJG3 40-49 years, female 0.9
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 0.9
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 0.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

11.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 11.9
FF:10014-101C5 62,83,84 years, mixed 11.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.