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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.9TPM
GTEx:6.6RPKM
FANTOM5:51.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not available
 

Antibody staining

Antibody HPA003259

  

Antibody CAB002578

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Not detected   Not detected  

Peripheral nerve/ganglion

 Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

4.9
overview Male, age 54 Sample 1
TPM: 3.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 7.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 5.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 5.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

6.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.3
Samples: 149

Max RPKM: 18.7
Min RPKM: 2.8
Std RPKM: 2.9
Median RPKM: 9.0
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 18.7
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 17.2
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 16.6
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 15.4
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 15.3
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 15.2
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 14.1
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 14.0
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 14.0
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 13.7
Show all
Colon - Transverse
RPKM: 4.5
Samples: 196

Max RPKM: 17.4
Min RPKM: 0.3
Std RPKM: 3.9
Median RPKM: 3.1
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 17.4
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 16.5
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 16.4
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 15.0
GTEX-S341-1426-SM-4AD6U 40-49 years, female 14.2
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 13.8
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 13.7
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 13.5
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 13.2
GTEX-117YX-0826-SM-5H11J 50-59 years, male 12.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

51.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 51.3
FF:10014-101C5 62,83,84 years, mixed 51.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.