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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.3TPM
GTEx:0.5RPKM
FANTOM5:9.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA021787

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

2.3
overview Male, age 54 Sample 1
TPM: 2.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.5
Samples: 149

Max RPKM: 1.2
Min RPKM: 0.1
Std RPKM: 0.2
Median RPKM: 0.4
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 1.2
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 1.1
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 1.0
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 1.0
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 1.0
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 1.0
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 0.9
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 0.9
GTEX-11GS4-1826-SM-5HL4T 60-69 years, male 0.9
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 0.9
Show all
Colon - Transverse
RPKM: 0.5
Samples: 196

Max RPKM: 1.4
Min RPKM: 0.1
Std RPKM: 0.2
Median RPKM: 0.4
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 1.4
GTEX-1128S-1626-SM-5H12O 60-69 years, female 1.2
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 1.2
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 1.0
GTEX-144GN-1126-SM-5LU33 50-59 years, male 1.0
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 1.0
GTEX-Y114-1526-SM-4TT79 50-59 years, female 1.0
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 1.0
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 0.9
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 0.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

9.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 9.2
FF:10014-101C5 62,83,84 years, mixed 9.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.