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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:114.7TPM
GTEx:68.1RPKM
FANTOM5:621.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not available
 

Antibody staining

Antibody HPA054807

  

Antibody HPA059299

  

Antibody CAB009437

  

Endothelial cells

 Medium   Not detected   Medium  

Glandular cells

 Medium   High   High  

Peripheral nerve/ganglion

 Medium   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

114.7
overview Male, age 54 Sample 1
TPM: 92.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 118.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 96.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 138
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 37.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 96.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 147
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 182.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 88.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 149.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 143.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 116.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 85.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

68.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 44.8
Samples: 149

Max RPKM: 87.9
Min RPKM: 6.8
Std RPKM: 20.5
Median RPKM: 41.4
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 87.9
GTEX-13PVR-1726-SM-5Q5EC 60-69 years, female 86.3
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 85.2
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 81.9
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 81.2
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 80.6
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 80.5
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 79.9
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 79.2
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 78.5
Show all
Colon - Transverse
RPKM: 85.9
Samples: 196

Max RPKM: 177.3
Min RPKM: 12.4
Std RPKM: 38.2
Median RPKM: 83.7
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 177.3
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 175.4
GTEX-12BJ1-2126-SM-5BC5O 60-69 years, male 156.5
GTEX-ZPIC-2226-SM-57WDX 40-49 years, female 156.1
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 155.4
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 152.9
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 152.4
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 148.6
GTEX-14DAR-1526-SM-5RQIX 50-59 years, male 146.5
GTEX-PLZ5-1126-SM-3P613 50-59 years, male 145.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

621.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 621.0
FF:10014-101C5 62,83,84 years, mixed 621.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.