Tissue expression of SYCP2 - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	SYCP2
Gene description	Synaptonemal complex protein 2
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	5
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Group enriched (breast, testis)
GTEx:	Tissue enriched (testis)
FANTOM5:	Tissue enriched (testis)

Protein evidence

Evidence at protein level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Group enriched (breast, testis)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Tissue enriched (testis)
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Tissue enriched (testis)

GENE INFORMATION
Gene name	SYCP2 (HGNC Symbol)
Synonyms	SCP2
Description	Synaptonemal complex protein 2 (HGNC Symbol)
Entrez gene summary	The synaptonemal complex is a proteinaceous structure that links homologous chromosomes during the prophase of meiosis. The protein encoded by this gene is a major component of the synaptonemal complex and may bind DNA at scaffold attachment regions. The encoded protein requires synaptonemal complex protein 3, but not 1, for inclusion in the synaptonemal complex. [provided by RefSeq, Jul 2008]
Chromosome	20
Cytoband	q13.33
Chromosome location (bp)	59863563 - 59933655
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000196074 (version 83.38)
Entrez gene	10388
UniProt	Q9BX26 (UniProt - Evidence at transcript level)
neXtProt	NX_Q9BX26
Antibodypedia	SYCP2 antibodies

PROTEIN BROWSER

SYCP2-001	SYCP2-002	SYCP2-003	SYCP2-008	SYCP2-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SYCP2-001 ENSP00000350162 ENST00000357552	Q9BX26 [Direct mapping] Synaptonemal complex protein 2 Show all	Predicted intracellular proteins Show all	GO:0000795 [synaptonemal complex] GO:0000800 [lateral element] GO:0003677 [DNA binding] GO:0005515 [protein binding] GO:0005634 [nucleus] GO:0007130 [synaptonemal complex assembly] GO:0007140 [male meiosis] GO:0007143 [female meiotic division] GO:0009566 [fertilization] GO:0009887 [organ morphogenesis] GO:0043066 [negative regulation of apoptotic process] GO:0046982 [protein heterodimerization activity] GO:0048808 [male genitalia morphogenesis] GO:0051301 [cell division] Show all	1530 aa 175.6 kDa	No	0
SYCP2-002 ENSP00000402456 ENST00000446834	A2A341 [Direct mapping] Synaptonemal complex protein 2 Show all	Predicted intracellular proteins Show all		1023 aa 116.5 kDa	No	0
SYCP2-003 ENSP00000399300 ENST00000425931	A2A2M9 [Direct mapping] Synaptonemal complex protein 2 Show all	Predicted intracellular proteins Show all		118 aa 13.4 kDa	No	0
SYCP2-008 ENSP00000404358 ENST00000412613	A2A340 [Direct mapping] Synaptonemal complex protein 2 Show all	Predicted intracellular proteins Show all		208 aa 25.1 kDa	No	0
SYCP2-201 ENSP00000360040 ENST00000371001	Q9BX26 [Direct mapping] Synaptonemal complex protein 2 Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all	GO:0000795 [synaptonemal complex] GO:0003677 [DNA binding] GO:0005634 [nucleus] GO:0007130 [synaptonemal complex assembly] GO:0051301 [cell division] Show all	1530 aa 175.6 kDa	No	0