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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:19.0TPM
GTEx:137.8RPKM
FANTOM5:397.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA043640

  

Antibody HPA046280

  

Antibody CAB005417

  

Antibody CAB012406

  

Endothelial cells

 Medium   Medium   Medium   High  

Glandular cells

 Medium   Medium   Medium   Medium  

Peripheral nerve/ganglion

 Medium   Medium   Medium   High  
       
       
       

COLON - HPA RNA-seq

Average TPM

19.0
overview Male, age 54 Sample 1
TPM: 14
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 20.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 53.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 42.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 41.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

137.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 153.9
Samples: 149

Max RPKM: 327.1
Min RPKM: 70.8
Std RPKM: 43.4
Median RPKM: 147.3
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 327.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 286.5
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 268.4
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 259.6
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 242.1
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 234.0
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 231.5
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 231.5
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 229.1
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 223.1
Show all
Colon - Transverse
RPKM: 125.6
Samples: 196

Max RPKM: 325.5
Min RPKM: 32.0
Std RPKM: 55.6
Median RPKM: 116.5
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 325.5
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 313.3
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 303.9
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 280.9
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 254.5
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 244.3
GTEX-QDVJ-1326-SM-48U1X 50-59 years, male 230.6
GTEX-11GSP-1626-SM-5986N 60-69 years, female 223.8
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 221.3
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 220.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

397.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 397.1
FF:10014-101C5 62,83,84 years, mixed 397.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.