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HSH2D

COLON - Expression summary

RNA expression
HPA:9.9TPM
GTEx:4.3RPKM
FANTOM5:17.0Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

9.9
overview Male, age 54 Sample 1
TPM: 12
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 8.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 9.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 15.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 13.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 11.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.3
Samples: 149

Max RPKM: 6.3
Min RPKM: 0.0
Std RPKM: 0.6
Median RPKM: 0.1
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 6.3
GTEX-V955-1726-SM-4JBHF 60-69 years, male 2.9
GTEX-XBED-1726-SM-47JYO 60-69 years, male 2.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 2.3
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 2.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 1.9
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 1.7
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 1.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 1.4
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 1.3
Show all
Colon - Transverse
RPKM: 7.3
Samples: 196

Max RPKM: 22.7
Min RPKM: 0.0
Std RPKM: 5.4
Median RPKM: 7.7
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 22.7
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 20.5
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 19.7
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 19.1
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 18.0
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 17.8
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 17.5
GTEX-1399U-1926-SM-5IFH7 50-59 years, female 17.1
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 16.4
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 16.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

17.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 17.0
FF:10014-101C5 62,83,84 years, mixed 17.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.