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SND1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:51.4TPM
GTEx:20.4RPKM
FANTOM5:105.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
 

Antibody staining

Antibody HPA002529

  

Antibody HPA002632

  

Antibody CAB019323

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Medium   Medium   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

51.4
overview Male, age 54 Sample 1
TPM: 55.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 44.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 46.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 37.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 43.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 57.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 66.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 46.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 53.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 66.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 63.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 48.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 38.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

20.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.5
Samples: 149

Max RPKM: 41.6
Min RPKM: 7.8
Std RPKM: 4.7
Median RPKM: 18.7
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 41.6
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 29.2
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 28.5
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 27.3
GTEX-13CF3-1326-SM-5LZXZ 60-69 years, female 27.0
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 26.8
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 26.1
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 25.6
GTEX-XBED-1726-SM-47JYO 60-69 years, male 25.3
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 24.6
Show all
Colon - Transverse
RPKM: 21.8
Samples: 196

Max RPKM: 42.8
Min RPKM: 8.5
Std RPKM: 5.0
Median RPKM: 21.2
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 42.8
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 41.1
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 37.0
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 35.2
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 33.6
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 32.9
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 32.9
GTEX-144GN-1126-SM-5LU33 50-59 years, male 32.8
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 32.5
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 32.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

105.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 105.8
FF:10014-101C5 62,83,84 years, mixed 105.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.