We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
PSAP
  • premium

    TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:368.4RPKM
FANTOM5:1450.7Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA004426

 

Antibody CAB004647

 

Glial cells

High   High  

Neuronal cells

High   High  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

368.4

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 368.4
Samples: 117

Max RPKM: 576.7
Min RPKM: 156.2
Std RPKM: 102.8
Median RPKM: 362.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 576.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 556.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 556.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 554.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 552.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 546.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 537.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 529.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 528.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 517.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 516.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 516.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 513.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 513.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 509.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 509.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 501.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 494.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 492.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 475.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 471.8
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 471.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 469.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 461.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 459.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 458.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 450.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 449.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 445.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 441.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 440.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 433.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 431.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 430.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 424.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 423.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 411.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 411.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 409.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 407.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 403.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 403.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 398.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 398.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 396.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 395.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 394.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 392.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 390.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 387.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 384.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 384.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 383.3
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 379.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 377.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 370.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 369.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 365.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 362.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 362.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 357.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 354.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 352.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 351.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 350.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 349.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 347.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 345.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 345.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 344.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 340.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 333.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 329.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 329.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 323.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 322.4
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 320.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 319.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 319.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 317.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 317.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 317.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 311.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 311.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 308.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 307.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 305.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 305.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 301.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 296.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 293.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 290.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 287.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 284.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 284.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 281.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 276.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 275.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 259.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 250.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 245.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 240.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 239.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 236.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 234.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 228.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 227.8
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 227.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 227.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 195.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 188.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 180.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 177.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 159.8
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 157.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 157.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 156.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

1450.7

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 1294.6
FF:10164-103B2 76 years, female 1294.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.