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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:5.8TPM
GTEx:4.1RPKM
FANTOM5:56.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA028276

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

5.8
overview Male, age 54 Sample 1
TPM: 8.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 5.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 5.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 5.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 6.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 7.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 6.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.4
Samples: 149

Max RPKM: 7.0
Min RPKM: 2.3
Std RPKM: 0.8
Median RPKM: 4.3
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 7.0
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 6.4
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 6.3
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 6.3
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 6.3
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 6.2
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 5.9
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 5.8
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 5.8
GTEX-13OW5-2826-SM-5KM1G 60-69 years, male 5.7
Show all
Colon - Transverse
RPKM: 3.9
Samples: 196

Max RPKM: 6.8
Min RPKM: 1.9
Std RPKM: 0.8
Median RPKM: 3.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 6.8
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 6.5
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 6.1
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 6.0
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 5.6
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 5.5
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 5.5
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 5.4
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 5.4
GTEX-139YR-2126-SM-5KM11 50-59 years, male 5.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

56.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 56.6
FF:10014-101C5 62,83,84 years, mixed 56.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.