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Gene name

Class

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Chromosome

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In atlas

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Reliability

Reliability

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Validation

Method

Validation

Method

Validation

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Searches

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Specificity

Cell line

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Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

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YTHDF2
  • TISSUE

  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

YTHDF2

Gene description

YTH N(6)-methyladenosine RNA binding protein 2

Protein class

Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

6
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Nuclear expression in most tissues with variable levels.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
HPA059621
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

YTHDF2 (HGNC Symbol)

Synonyms

CAHL, HGRG8, NY-REN-2

Description

YTH N(6)-methyladenosine RNA binding protein 2 (HGNC Symbol)

Entrez gene summary

This gene encodes a member of the YTH (YT521-B homology) superfamily containing YTH domain. The YTH domain is typical for the eukaryotes and is particularly abundant in plants. The YTH domain is usually located in the middle of the protein sequence and may function in binding to RNA. In addition to a YTH domain, this protein has a proline rich region which may be involved in signal transduction. An Alu-rich domain has been identified in one of the introns of this gene, which is thought to be associated with human longevity. In addition, reciprocal translocations between this gene and the Runx1 (AML1) gene on chromosome 21 has been observed in patients with acute myeloid leukemia. This gene was initially mapped to chromosome 14, which was later turned out to be a pseudogene. Alternatively spliced transcript variants encoding different isoforms have been identified in this gene. [provided by RefSeq, Oct 2012]

Chromosome

1

Cytoband

p35.3

Chromosome location (bp)

28736621 - 28769775

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000198492 (version 83.38)

Entrez gene

51441

UniProt

Q9Y5A9 (UniProt - Evidence at protein level)

neXtProt

NX_Q9Y5A9

Antibodypedia

YTHDF2 antibodies

PROTEIN BROWSER

YTHDF2-001
YTHDF2-003
YTHDF2-006
YTHDF2-008
YTHDF2-201
YTHDF2-202

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

YTHDF2-001
ENSP00000362918
ENST00000373812
Q9Y5A9 [Direct mapping]
YTH domain-containing family protein 2
Show all
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [cytoplasmic mRNA processing body]
GO:0006959 [humoral immune response]
GO:0043488 [regulation of mRNA stability]
GO:0044822 [poly(A) RNA binding]
GO:1990247 [N6-methyladenosine-containing RNA binding]
Show all
579 aa
62.3 kDa
No 0
YTHDF2-003
ENSP00000474446
ENST00000474884
S4R3J8 [Direct mapping]
YTH domain-containing family protein 2
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
200 aa
21 kDa
No 0
YTHDF2-006
ENSP00000474784
ENST00000496288
S4R3V3 [Direct mapping]
YTH domain-containing family protein 2
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
241 aa
24.9 kDa
No 0
YTHDF2-008
ENSP00000439394
ENST00000541996
Q9Y5A9 [Direct mapping]
YTH domain-containing family protein 2
Show all
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [cytoplasmic mRNA processing body]
GO:0006959 [humoral immune response]
GO:0043488 [regulation of mRNA stability]
GO:0044822 [poly(A) RNA binding]
GO:1990247 [N6-methyladenosine-containing RNA binding]
Show all
529 aa
56.9 kDa
No 0
YTHDF2-201
ENSP00000444660
ENST00000542507
Q9Y5A9 [Direct mapping]
YTH domain-containing family protein 2
Show all
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000932 [cytoplasmic mRNA processing body]
GO:0006959 [humoral immune response]
GO:0043488 [regulation of mRNA stability]
GO:0044822 [poly(A) RNA binding]
GO:1990247 [N6-methyladenosine-containing RNA binding]
Show all
579 aa
62.3 kDa
No 0
YTHDF2-202
ENSP00000481408
ENST00000621244
A0A087WXZ3 [Direct mapping]
YTH domain-containing family protein 2
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
569 aa
61.2 kDa
No 0

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