Fields »
ABOUT
HELP
BLOG
HMGN2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:281.9TPM
GTEx:59.1RPKM
FANTOM5:52.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody CAB018371

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

281.9
overview Male, age 54 Sample 1
TPM: 304.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 280.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 299.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 322.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 173
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 395.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 440.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 205.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 268.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 293.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 253
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 238.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 189.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

59.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 57.0
Samples: 149

Max RPKM: 125.0
Min RPKM: 16.7
Std RPKM: 18.7
Median RPKM: 55.1
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 125.0
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 107.7
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 92.0
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 91.2
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 89.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 89.2
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 87.7
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 87.6
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 85.7
GTEX-13OW8-2726-SM-5L3FZ 60-69 years, male 85.0
Show all
Colon - Transverse
RPKM: 60.7
Samples: 196

Max RPKM: 128.1
Min RPKM: 19.6
Std RPKM: 17.4
Median RPKM: 57.0
GTEX-1128S-1626-SM-5H12O 60-69 years, female 128.1
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 109.0
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 108.9
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 101.7
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 98.2
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 98.1
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 96.0
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 94.2
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 93.1
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 92.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

52.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 52.2
FF:10014-101C5 62,83,84 years, mixed 52.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.