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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

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Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

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Score

Score

Score

Antibodies

Column

 
 
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HLA-B
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    TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

HLA-B

Gene description

Major histocompatibility complex, class I, B

Protein class

Cancer-related genes
Predicted intracellular proteins
Predicted membrane proteins

Predicted localization

Intracellular,Membrane

Number of transcripts

2
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Mixed
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Membranous expression in most cell types including epithelia and endothelial cells. Highest levels in monocyte-derived and lymphoid cells.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Supported based on 1 antibody.
CAB015418
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Spleen

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

HLA-B (HGNC Symbol)

Synonyms

AS

Description

Major histocompatibility complex, class I, B (HGNC Symbol)

Entrez gene summary

HLA-B belongs to the HLA class I heavy chain paralogues. This class I molecule is a heterodimer consisting of a heavy chain and a light chain (beta-2 microglobulin). The heavy chain is anchored in the membrane. Class I molecules play a central role in the immune system by presenting peptides derived from the endoplasmic reticulum lumen. They are expressed in nearly all cells. The heavy chain is approximately 45 kDa and its gene contains 8 exons. Exon 1 encodes the leader peptide, exon 2 and 3 encode the alpha1 and alpha2 domains, which both bind the peptide, exon 4 encodes the alpha3 domain, exon 5 encodes the transmembrane region and exons 6 and 7 encode the cytoplasmic tail. Polymorphisms within exon 2 and exon 3 are responsible for the peptide binding specificity of each class one molecule. Typing for these polymorphisms is routinely done for bone marrow and kidney transplantation. Hundreds of HLA-B alleles have been described. [provided by RefSeq, Jul 2008]

Chromosome

6

Cytoband

p21.33

Chromosome location (bp)

31353872 - 31357188

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000234745 (version 83.38)

Entrez gene

3106

UniProt

P01889 (UniProt - Evidence at protein level), P30480 (UniProt - Evidence at protein level), P30486 (UniProt - Evidence at protein level), Q29836 (UniProt - Evidence at protein level), Q31610 (UniProt - Evidence at protein level), Q31612 (UniProt - Evidence at protein level)

neXtProt

NX_P01889, NX_P30480, NX_P30486, NX_Q29836, NX_Q31610, NX_Q31612

Antibodypedia

HLA-B antibodies

PROTEIN BROWSER

HLA-B-001
HLA-B-003

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

HLA-B-001
ENSP00000399168
ENST00000412585
P01889 [Direct mapping]
HLA class I histocompatibility antigen, B-7 alpha chain
P30480 [Direct mapping]
HLA class I histocompatibility antigen, B-42 alpha chain
P30486 [Direct mapping]
HLA class I histocompatibility antigen, B-48 alpha chain
Q29836 [Direct mapping]
HLA class I histocompatibility antigen, B-67 alpha chain
Q31610 [Direct mapping]
HLA class I histocompatibility antigen, B-81 alpha chain
Q31612 [Direct mapping]
HLA class I histocompatibility antigen, B-73 alpha chain
E5FQ95 [Target identity:100%; Query identity:100%]
MHC class I antigen
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0002474 [antigen processing and presentation of peptide antigen via MHC class I]
GO:0002479 [antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent]
GO:0002480 [antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-independent]
GO:0002667 [regulation of T cell anergy]
GO:0005102 [receptor binding]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0005887 [integral component of plasma membrane]
GO:0006955 [immune response]
GO:0009986 [cell surface]
GO:0012507 [ER to Golgi transport vesicle membrane]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016032 [viral process]
GO:0019221 [cytokine-mediated signaling pathway]
GO:0019882 [antigen processing and presentation]
GO:0030670 [phagocytic vesicle membrane]
GO:0031901 [early endosome membrane]
GO:0032655 [regulation of interleukin-12 production]
GO:0032675 [regulation of interleukin-6 production]
GO:0042270 [protection from natural killer cell mediated cytotoxicity]
GO:0042590 [antigen processing and presentation of exogenous peptide antigen via MHC class I]
GO:0042605 [peptide antigen binding]
GO:0042612 [MHC class I protein complex]
GO:0050776 [regulation of immune response]
GO:0060333 [interferon-gamma-mediated signaling pathway]
GO:0060337 [type I interferon signaling pathway]
GO:0070062 [extracellular exosome]
GO:0071556 [integral component of lumenal side of endoplasmic reticulum membrane]
GO:2001198 [regulation of dendritic cell differentiation]
Show all
362 aa
40.5 kDa
Yes 1
HLA-B-003
ENSP00000405931
ENST00000434333
F6U0H7 [Direct mapping]
HLA class I histocompatibility antigen, B-46 alpha chain
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0002474 [antigen processing and presentation of peptide antigen via MHC class I]
GO:0006955 [immune response]
GO:0042605 [peptide antigen binding]
GO:0042612 [MHC class I protein complex]
Show all
246 aa
27.8 kDa
No 0

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