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HLA-B

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:421.0TPM
GTEx:399.4RPKM
FANTOM5:1210.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody CAB015418

  

Endothelial cells

 Medium  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

421.0
overview Male, age 54 Sample 1
TPM: 668.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 805.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 54.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 627.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 309.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 345
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 946.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1706.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 0
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

399.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 198.3
Samples: 149

Max RPKM: 658.1
Min RPKM: 66.6
Std RPKM: 103.7
Median RPKM: 173.2
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 658.1
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 567.9
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 557.3
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 549.3
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 526.0
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 423.5
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 382.9
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 379.8
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 379.1
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 370.4
Show all
Colon - Transverse
RPKM: 552.4
Samples: 196

Max RPKM: 2501.5
Min RPKM: 92.0
Std RPKM: 327.6
Median RPKM: 527.9
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 2501.5
GTEX-1399S-1926-SM-5J2M5 30-39 years, female 1680.4
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 1521.5
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 1474.3
GTEX-SNOS-1226-SM-4DM5H 40-49 years, male 1269.2
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 1261.8
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 1250.8
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 1234.5
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 1199.2
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 1163.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1210.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1210.2
FF:10014-101C5 62,83,84 years, mixed 1210.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.