Cell atlas - SMIM1 - The Human Protein Atlas

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SMIM1

TISSUE

CELL

PATHOLOGY

CELL ATLAS RNA EXPRESSION

GENE/PROTEIN

Dictionary

Human cell

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GENERAL INFORMATION
Gene name	SMIM1
Gene description	Small integral membrane protein 1 (Vel blood group)
Protein class	Blood group antigen proteins Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	3
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION
Summary
RNA cell category	Group enriched (HEL, K-562, Hep G2)
Protein evidence	Evidence at protein level
Main location	Not available

DATA RELIABILITY
Reliability score	Pending cell analysis.

ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Group enriched (HEL, K-562, Hep G2) Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

GENE INFORMATION
Gene name	SMIM1 (HGNC Symbol)
Synonyms	Vel
Description	Small integral membrane protein 1 (Vel blood group) (HGNC Symbol)
Entrez gene summary	This gene encodes a small, conserved protein that participates in red blood cell formation. The encoded protein is localized to the cell membrane and is the antigen for the Vel blood group. Alternative splicing results in different transcript variants that encode the same protein. [provided by RefSeq, Dec 2013]
Chromosome	1
Cytoband	p36.32
Chromosome location (bp)	3772788 - 3775982
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000235169 (version 83.38)
Entrez gene	388588
UniProt	B2RUZ4 (UniProt - Evidence at protein level)
neXtProt	NX_B2RUZ4
Antibodypedia	SMIM1 antibodies

PROTEIN BROWSER

SMIM1-001	SMIM1-002	SMIM1-003

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SMIM1-001 ENSP00000457386 ENST00000444870	B2RUZ4 [Direct mapping] Small integral membrane protein 1 M4WDD3 [Target identity:100%; Query identity:100%] Small integral membrane protein 1 Show all	Blood group antigen proteins Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] GO:0070062 [extracellular exosome] Show all	78 aa 8.7 kDa	No	1
SMIM1-002 ENSP00000457674 ENST00000452264		Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		5 aa 0.6 kDa	No	0
SMIM1-003 ENSP00000456559 ENST00000561886	H3BS66 [Direct mapping] Small integral membrane protein 1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		37 aa 4.2 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.