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ARHGEF25

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:19.2TPM
GTEx:69.3RPKM
FANTOM5:51.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA052016

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

19.2
overview Male, age 54 Sample 1
TPM: 13.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 7.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 59.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 13
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 9.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 43.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 32.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 26.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

69.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 106.0
Samples: 149

Max RPKM: 186.5
Min RPKM: 43.0
Std RPKM: 25.2
Median RPKM: 104.9
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 186.5
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 177.4
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 161.0
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 153.1
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 152.5
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 150.5
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 148.4
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 148.2
GTEX-YECK-2826-SM-5IFHF 60-69 years, male 148.1
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 146.5
Show all
Colon - Transverse
RPKM: 41.4
Samples: 196

Max RPKM: 138.1
Min RPKM: 3.1
Std RPKM: 36.1
Median RPKM: 31.8
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 138.1
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 137.8
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 131.8
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 126.2
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 117.4
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 114.8
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 113.8
GTEX-11GSP-1626-SM-5986N 60-69 years, female 112.4
GTEX-13OW5-2626-SM-5MR3M 60-69 years, male 110.3
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 109.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

51.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 51.5
FF:10014-101C5 62,83,84 years, mixed 51.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.