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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:59.7TPM
GTEx:12.5RPKM
FANTOM5:23.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA047883

  

Antibody HPA056210

  

Endothelial cells

 Low   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   
   

COLON - HPA RNA-seq

Average TPM

59.7
overview Male, age 54 Sample 1
TPM: 243.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 178
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 42.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 25.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 48.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 19.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 23.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 48.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 18.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 27.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 36.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 43.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 21.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.6
Samples: 149

Max RPKM: 23.0
Min RPKM: 0.0
Std RPKM: 2.5
Median RPKM: 0.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 23.0
GTEX-V955-1726-SM-4JBHF 60-69 years, male 13.8
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 9.7
GTEX-XBED-1726-SM-47JYO 60-69 years, male 9.2
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 8.3
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 6.0
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 2.5
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 2.4
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 1.7
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 1.3
Show all
Colon - Transverse
RPKM: 21.6
Samples: 196

Max RPKM: 106.5
Min RPKM: 0.0
Std RPKM: 19.6
Median RPKM: 20.7
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 106.5
GTEX-WFON-1426-SM-4LVMT 40-49 years, male 90.2
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 74.7
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 68.0
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 62.2
GTEX-R55G-1226-SM-48FDC 40-49 years, female 59.5
GTEX-OXRK-1726-SM-3NB16 50-59 years, female 57.2
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 56.6
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 53.8
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 51.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

23.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 23.1
FF:10014-101C5 62,83,84 years, mixed 23.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.