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MARS2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:5.4TPM
GTEx:2.4RPKM
FANTOM5:8.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA035589

  

Antibody HPA035590

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 High   Medium  

Peripheral nerve/ganglion

 Low   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

5.4
overview Male, age 54 Sample 1
TPM: 4.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 3.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 7.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 3.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 6.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.1
Samples: 149

Max RPKM: 4.7
Min RPKM: 0.3
Std RPKM: 0.6
Median RPKM: 1.0
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 4.7
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 3.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 2.7
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 2.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 2.5
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 2.5
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 2.4
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 2.0
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 2.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 1.9
Show all
Colon - Transverse
RPKM: 3.4
Samples: 196

Max RPKM: 11.4
Min RPKM: 0.4
Std RPKM: 1.9
Median RPKM: 3.3
GTEX-144GM-1226-SM-5LU52 20-29 years, male 11.4
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 9.7
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 9.1
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 8.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 8.0
GTEX-QMRM-1226-SM-447C6 50-59 years, male 7.9
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 7.4
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 7.3
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 7.2
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 6.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

8.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 8.8
FF:10014-101C5 62,83,84 years, mixed 8.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.