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HOXB7

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.4TPM
GTEx:7.7RPKM
FANTOM5:13.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA049940

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

17.4
overview Male, age 54 Sample 1
TPM: 16.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 17.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 14.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 26.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 23
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 27
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 18.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 23.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 17.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.1
Samples: 149

Max RPKM: 8.2
Min RPKM: 0.7
Std RPKM: 1.3
Median RPKM: 2.8
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 8.2
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 6.7
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 6.7
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 6.5
GTEX-145LS-2926-SM-5O99G 60-69 years, female 6.4
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 6.2
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 6.1
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 5.7
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 5.5
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 5.5
Show all
Colon - Transverse
RPKM: 11.1
Samples: 196

Max RPKM: 27.6
Min RPKM: 1.0
Std RPKM: 5.6
Median RPKM: 11.7
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 27.6
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 21.8
GTEX-139YR-2126-SM-5KM11 50-59 years, male 21.2
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 20.9
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 20.2
GTEX-R55G-1226-SM-48FDC 40-49 years, female 20.0
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 19.7
GTEX-PLZ5-1126-SM-3P613 50-59 years, male 19.6
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 19.6
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 19.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

13.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 13.7
FF:10014-101C5 62,83,84 years, mixed 13.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.