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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:7.3TPM
GTEx:8.9RPKM
FANTOM5:38.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA039362

  

Antibody HPA040063

  

Endothelial cells

 High   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High  
      
   
   
   

COLON - HPA RNA-seq

Average TPM

7.3
overview Male, age 54 Sample 1
TPM: 10.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 6.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 6.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 6.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 8.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.5
Samples: 149

Max RPKM: 18.3
Min RPKM: 6.2
Std RPKM: 2.0
Median RPKM: 9.1
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 18.3
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 14.4
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 14.1
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 13.9
GTEX-12696-1926-SM-5EGJT 60-69 years, male 13.8
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 13.4
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 13.4
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 13.3
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 13.3
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 13.3
Show all
Colon - Transverse
RPKM: 8.5
Samples: 196

Max RPKM: 15.1
Min RPKM: 3.7
Std RPKM: 1.6
Median RPKM: 8.3
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 15.1
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 14.6
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 13.2
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 12.4
GTEX-UJMC-1326-SM-4IHLS 50-59 years, male 12.0
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 11.8
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 11.6
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 11.5
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 11.2
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 11.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

38.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 38.3
FF:10014-101C5 62,83,84 years, mixed 38.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.