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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:18.6TPM
GTEx:12.0RPKM
FANTOM5:78.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Low
 

Antibody staining

Antibody HPA023690

  

Endothelial cells

 Medium  

Glandular cells

 Low  
 
 
 

COLON - HPA RNA-seq

Average TPM

18.6
overview Male, age 54 Sample 1
TPM: 23.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 25.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 23.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 15.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 16
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 16.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 18.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 13.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 21.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 18.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

12.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 13.3
Samples: 149

Max RPKM: 28.4
Min RPKM: 7.3
Std RPKM: 3.0
Median RPKM: 13.1
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 28.4
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 20.4
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 20.0
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 19.9
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 19.5
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 18.8
GTEX-13111-1926-SM-5GCOL 50-59 years, male 18.7
GTEX-ZZ64-0826-SM-5E449 20-29 years, male 18.3
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 18.2
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 18.2
Show all
Colon - Transverse
RPKM: 10.9
Samples: 196

Max RPKM: 26.2
Min RPKM: 4.8
Std RPKM: 3.5
Median RPKM: 10.2
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 26.2
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 22.4
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 22.1
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 22.0
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 20.5
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 20.1
GTEX-Y3I4-1426-SM-4TT9C 50-59 years, male 19.6
GTEX-Y114-1526-SM-4TT79 50-59 years, female 18.2
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 18.1
GTEX-ZZ64-0726-SM-5GZX4 20-29 years, male 18.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

78.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 78.1
FF:10014-101C5 62,83,84 years, mixed 78.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.