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SCGN

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.3TPM
GTEx:9.5RPKM
FANTOM5:14.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 
 

Antibody staining

Antibody HPA006641

  

Antibody CAB004005

  

Antibody CAB062563

  

Antibody CAB068232

  

Endothelial cells

 Not detected   Not detected   Not detected   Not detected  

Glandular cells

 Medium   Medium   Not detected   Medium  

Peripheral nerve/ganglion

 High   Not detected   Medium  
          
       
       

COLON - HPA RNA-seq

Average TPM

17.3
overview Male, age 54 Sample 1
TPM: 7.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 16.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 24.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 21.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 17.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 26.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 13.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 19.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 28.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 16.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

9.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.4
Samples: 149

Max RPKM: 50.2
Min RPKM: 0.2
Std RPKM: 6.8
Median RPKM: 9.4
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 50.2
GTEX-13111-1926-SM-5GCOL 50-59 years, male 29.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 28.7
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 26.0
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 25.2
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 23.1
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 22.3
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 21.8
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 21.6
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 20.9
Show all
Colon - Transverse
RPKM: 8.9
Samples: 196

Max RPKM: 51.4
Min RPKM: 0.4
Std RPKM: 7.2
Median RPKM: 6.8
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 51.4
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 46.6
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 34.8
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 30.0
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 28.7
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 27.5
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 26.3
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 26.0
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 24.4
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 24.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

14.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 14.2
FF:10014-101C5 62,83,84 years, mixed 14.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.