Tissue expression of PTPRC - Staining in adipose tissue - The Human Protein Atlas

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PTPRC

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TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA ADIPOSE TISSUE

GENE/PROTEIN

Antibody validation

Dictionary
	Soft tissue


Tissue proteome
	Adipose

SOFT TISSUE - Expression summary

Protein expression

h

m

l

n

RNA expression

HPA:	38.3	TPM
GTEx:	7.2	RPKM
FANTOM5:	72.5	Tags Per Million

SOFT TISSUE 1 - Annotated protein expression

Annotated protein
expression

Chondrocytes:	Not detected
Fibroblasts:	Not detected
Adipocytes:	Not detected
Peripheral nerve:	Not detected

Antibody staining	Antibody HPA000440		Antibody CAB000052		Antibody CAB002800		Antibody CAB056154		Antibody CAB068221
Chondrocytes	Not detected		Not detected
Fibroblasts	Not detected		Not detected		Not detected		Not detected		Medium
Adipocytes	Not detected		Not detected
Peripheral nerve	Not detected

SOFT TISSUE 2 - Annotated protein expression

Annotated protein
expression

Adipocytes:	Not detected
Fibroblasts:	Not detected
Peripheral nerve:	Not detected

Antibody staining	Antibody HPA000440		Antibody CAB000052		Antibody CAB002800		Antibody CAB056154		Antibody CAB068221
Adipocytes	Not detected		Not detected		Not detected		Not detected		Not detected
Fibroblasts	Not detected		Not detected		Not detected		Not detected		Not detected
Peripheral nerve	Not detected		Not detected		Not detected		Not detected

ADIPOSE TISSUE - HPA RNA-seq

Average TPM	38.3

N/A

Female, age 80

Sample 1
TPM: 6.5

Cell types%

Adipocytes: 95
Other cell types: 5

N/A

Female, age 45

Sample 2
TPM: 7.2

N/A

Female, age 57

Sample 3
TPM: 7.1

Cell types%

Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 74

Sample 4
TPM: 73.9

Cell types%

Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5

overview

Female, age 59

Sample 5
TPM: 96.9

Cell types%

Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

Average RPKM	7.2

GTEx sample id

Sample description

RPKM

Adipose - Subcutaneous
RPKM: 5.5

Samples: 350

Max RPKM: 21.7
Min RPKM: 0.6
Std RPKM: 3.3
Median RPKM: 4.5

GTEX-111VG-2326-SM-5N9BK

60-69 years, male

21.7

GTEX-13NZA-0126-SM-5K7UH

60-69 years, male

16.8

GTEX-ZVZO-0226-SM-5A5LA

40-49 years, male

16.7

GTEX-11GSO-2326-SM-5A5LX

60-69 years, male

16.5

GTEX-13JVG-0226-SM-5J1MW

60-69 years, male

16.4

GTEX-139TU-0226-SM-5J1NM

60-69 years, male

16.3

GTEX-13FTY-0626-SM-5L3F8

40-49 years, female

15.7

GTEX-11PRG-0626-SM-5BC56

50-59 years, male

15.0

GTEX-QDT8-0226-SM-32PL4

30-39 years, female

14.8

GTEX-Q734-1826-SM-2I3EL

40-49 years, female

14.2

Show all

Adipose - Visceral (Omentum)
RPKM: 9.8

Samples: 227

Max RPKM: 65.6
Min RPKM: 1.7
Std RPKM: 7.0
Median RPKM: 8.1

GTEX-ZVZP-1126-SM-5GICU

50-59 years, male

65.6

GTEX-ZDYS-2226-SM-5S2MI

50-59 years, male

39.9

GTEX-Y9LG-1226-SM-4VBQA

30-39 years, male

39.4

GTEX-ZE7O-1526-SM-5J1NH

50-59 years, female

30.4

GTEX-ZV7C-0826-SM-59HK8

50-59 years, male

29.8

GTEX-WFJO-1026-SM-3GIKL

30-39 years, male

25.1

GTEX-11EM3-1126-SM-5A5KM

20-29 years, female

24.8

GTEX-14A6H-1026-SM-5SIAZ

30-39 years, male

23.6

GTEX-1117F-1326-SM-5EGHH

60-69 years, female

23.2

GTEX-132Q8-1726-SM-5EGK8

60-69 years, male

22.8

Show all

ADIPOSE TISSUE - FANTOM5 CAGE

Average Tags Per Million	72.5

FANTOM5 sample id

Sample description

Tags Per Million

Adipose tissue
Tags Per Million: 72.5

65,65,76 years, mixed

72.5

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.