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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:35.0TPM
GTEx:10.5RPKM
FANTOM5:28.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA037918

  

Antibody HPA037919

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Medium   Low  

Peripheral nerve/ganglion

 Low   Low  
   
   
   

COLON - HPA RNA-seq

Average TPM

35.0
overview Male, age 54 Sample 1
TPM: 31
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 31.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 32.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 54.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 18.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 49.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 38
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 27.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 44.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 30.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 35
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 33.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 28.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

10.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 12.9
Samples: 149

Max RPKM: 24.2
Min RPKM: 6.6
Std RPKM: 3.3
Median RPKM: 12.5
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 24.2
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 22.4
GTEX-11ZTS-1526-SM-5N9G7 60-69 years, female 22.2
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 21.2
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 20.1
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 19.6
GTEX-12WSD-2626-SM-5EGJE 60-69 years, female 18.9
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 18.6
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 18.6
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 18.4
Show all
Colon - Transverse
RPKM: 8.7
Samples: 196

Max RPKM: 20.5
Min RPKM: 2.8
Std RPKM: 2.8
Median RPKM: 8.3
GTEX-11GSP-1626-SM-5986N 60-69 years, female 20.5
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 19.3
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 17.1
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 16.9
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 16.4
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 14.6
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 14.5
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 14.1
GTEX-P78B-1726-SM-3P5ZV 40-49 years, female 14.0
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 13.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

28.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 28.6
FF:10014-101C5 62,83,84 years, mixed 28.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.