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Field

Term
Gene name

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Subclass

Chromosome

External id

In atlas

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Reliability

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Validation

Method

Validation

Method

Validation

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Cancer

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Tissue

Detectable

Cell line

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Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA URINARY BLADDER

GENE/PROTEIN

Antibody validation


Dictionary

Urinary bladder

URINARY BLADDER - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:0.1TPM
GTEx:0.4RPKM
FANTOM5:0.1Tags Per Million

URINARY BLADDER - Annotated protein expression

Annotated protein
expression

Urothelial cells:Low
 

Antibody staining

Antibody HPA001527

 

Antibody HPA005692

 

Antibody CAB009538

 

Urothelial cells

Low   Medium   Not detected  
     
     
     

URINARY BLADDER - HPA RNA-seq

Average TPM

0.1

overview Male, age 74 Sample 1
TPM: 0.3
Cell types%
Urothelial cells: 5
Smooth muscle cells: 60
Fibroblasts: 20
Endothelial cells: 10
Other cell types: 5
overview Male, age 80 Sample 2
TPM: 0
Cell types%
Urothelial cells: 10
Smooth muscle cells: 45
Fibroblasts: 15
Endothelial cells: 10
Other cell types: 20

URINARY BLADDER - GTEx RNA-seq

Average RPKM

0.4

GTEx sample id

Sample description

RPKM

Bladder
RPKM: 0.4
Samples: 11

Max RPKM: 0.8
Min RPKM: 0.1
Std RPKM: 0.1
Median RPKM: 0.3
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 0.8
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 0.6
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 0.5
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 0.4
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 0.3
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 0.3
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 0.3
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 0.2
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 0.2
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 0.1
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 0.1
Show all

URINARY BLADDER - FANTOM5 CAGE

Average Tags Per Million

0.1

FANTOM5 sample id

Sample description

Tags Per Million

Bladder
Tags Per Million: 0.1
FF:10011-101C2 55,58,79 years, mixed 0.1

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