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DSP

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:46.0TPM
GTEx:13.7RPKM
FANTOM5:184.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA045840

  

Antibody HPA054950

  

Antibody CAB037324

  

Endothelial cells

 Medium   Low   Not detected  

Glandular cells

 Medium   Not detected   Not detected  

Peripheral nerve/ganglion

 Low   Not detected   Not detected  
     
     

COLON - HPA RNA-seq

Average TPM

46.0
overview Male, age 54 Sample 1
TPM: 57.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 52.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 61.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 69.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 23.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 24.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 45.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 49.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 34.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 50.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 54.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 40
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 34.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.3
Samples: 149

Max RPKM: 8.0
Min RPKM: 0.2
Std RPKM: 1.1
Median RPKM: 1.0
GTEX-XBED-1726-SM-47JYO 60-69 years, male 8.0
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 6.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 6.6
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 5.8
GTEX-V955-1726-SM-4JBHF 60-69 years, male 5.6
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 4.1
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 3.7
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 3.4
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 3.1
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 2.9
Show all
Colon - Transverse
RPKM: 23.1
Samples: 196

Max RPKM: 60.3
Min RPKM: 0.3
Std RPKM: 17.3
Median RPKM: 25.5
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 60.3
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 58.3
GTEX-R55G-1226-SM-48FDC 40-49 years, female 53.6
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 51.7
GTEX-14DAR-1526-SM-5RQIX 50-59 years, male 51.5
GTEX-139T6-1326-SM-5IFFO 50-59 years, male 51.4
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 51.3
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 51.1
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 51.1
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 49.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

184.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 184.8
FF:10014-101C5 62,83,84 years, mixed 184.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.