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NOP56

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:24.2TPM
GTEx:19.7RPKM
FANTOM5:21.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA049918

  

Antibody CAB075757

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Not detected   Low  

Peripheral nerve/ganglion

 Not detected   Low  
   
   

COLON - HPA RNA-seq

Average TPM

24.2
overview Male, age 54 Sample 1
TPM: 19.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 19.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 19.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 36.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 32.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 29.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 31.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 26.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 29.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 19.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

19.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.8
Samples: 149

Max RPKM: 48.1
Min RPKM: 10.9
Std RPKM: 5.4
Median RPKM: 17.8
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 48.1
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 42.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 34.7
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 31.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 31.4
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 31.3
GTEX-11I78-1326-SM-5PNY9 50-59 years, female 29.5
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 28.6
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 27.6
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 27.3
Show all
Colon - Transverse
RPKM: 20.4
Samples: 196

Max RPKM: 46.9
Min RPKM: 6.4
Std RPKM: 5.8
Median RPKM: 19.2
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 46.9
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 40.5
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 37.4
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 36.1
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 34.5
GTEX-144GM-1226-SM-5LU52 20-29 years, male 34.2
GTEX-QMRM-1226-SM-447C6 50-59 years, male 34.1
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 33.7
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 33.6
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 33.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

21.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 21.3
FF:10014-101C5 62,83,84 years, mixed 21.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.