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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:4.3TPM
GTEx:3.4RPKM
FANTOM5:16.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA002858

  

Antibody CAB000076

  

Antibody CAB055505

  

Endothelial cells

 Not detected   Low   Not detected  

Glandular cells

 Medium   Medium   Not detected  

Peripheral nerve/ganglion

 High   High   High  
     
     
     

COLON - HPA RNA-seq

Average TPM

4.3
overview Male, age 54 Sample 1
TPM: 4.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 4.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 4.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 3.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 5.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 3.8
Samples: 149

Max RPKM: 10.5
Min RPKM: 0.5
Std RPKM: 1.9
Median RPKM: 3.5
GTEX-12696-1926-SM-5EGJT 60-69 years, male 10.5
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 9.8
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 9.3
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 8.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 8.2
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 7.9
GTEX-12KS4-2326-SM-5EGJB 30-39 years, male 7.8
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 7.8
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 7.5
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 7.4
Show all
Colon - Transverse
RPKM: 3.2
Samples: 196

Max RPKM: 10.1
Min RPKM: 1.1
Std RPKM: 1.5
Median RPKM: 2.8
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 10.1
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 10.1
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 7.4
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 7.2
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 6.7
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 6.3
GTEX-XUW1-1926-SM-4BOP1 50-59 years, female 6.3
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 6.1
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 6.1
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 6.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

16.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 16.9
FF:10014-101C5 62,83,84 years, mixed 16.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.