Fields »
ABOUT
HELP
BLOG
JADE3

COLON - Expression summary

RNA expression
HPA:2.8TPM
GTEx:2.1RPKM
FANTOM5:6.8Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA006007

  

Endothelial cells

 Not detected  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

2.8
overview Male, age 54 Sample 1
TPM: 3.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 3.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 2.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 3.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.4
Samples: 149

Max RPKM: 4.6
Min RPKM: 0.7
Std RPKM: 0.6
Median RPKM: 2.4
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 4.6
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 4.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 4.3
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 3.9
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 3.8
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 3.8
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 3.8
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 3.7
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 3.7
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 3.7
Show all
Colon - Transverse
RPKM: 1.8
Samples: 196

Max RPKM: 4.0
Min RPKM: 0.6
Std RPKM: 0.5
Median RPKM: 1.7
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 4.0
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 3.6
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 3.4
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 3.4
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 3.3
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 3.2
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 3.2
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 3.1
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 3.1
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 3.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

6.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 6.8
FF:10014-101C5 62,83,84 years, mixed 6.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.