Tissue expression of JADE3 - Summary - The Human Protein Atlas

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JADE3

TISSUE

CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	JADE3
Gene description	Jade family PHD finger 3
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Mixed
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Estimation of protein expression could not be performed. View primary data.

DATA RELIABILITY
Data reliability description	RNA-based expert annotation gave inconclusive results. Pending external verification.
Reliability score	Uncertain based on 1 antibody. HPA006007
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

N/A

Caudate

N/A

N/A

Cerebellum

N/A

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

N/A

Bronchus

N/A

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

N/A

Skin

N/A

Skin

N/A

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
RNA-based expert annotation could not be performed, due to inconclusive results. View immunohistochemistry primary data.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Mixed
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	JADE3 (HGNC Symbol)
Synonyms	JADE-3, KIAA0215, PHF16
Description	Jade family PHD finger 3 (HGNC Symbol)
Entrez gene summary	This gene encodes a member of a family of large proteins containing PHD (plant homeo domain)-type zinc fingers. The encoded protein may be associated in a nuclear complex that functions in histone H4 acetylation. Alternative splicing results in multiple transcript variants encoding the same protein. [provided by RefSeq, Aug 2013]
Chromosome	X
Cytoband	p11.3
Chromosome location (bp)	46912276 - 47061242
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000102221 (version 83.38)
Entrez gene	9767
UniProt	Q92613 (UniProt - Evidence at protein level)
neXtProt	NX_Q92613
Antibodypedia	JADE3 antibodies

PROTEIN BROWSER

JADE3-001	JADE3-002	JADE3-003	JADE3-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
JADE3-001 ENSP00000481850 ENST00000614628	Q92613 [Direct mapping] Protein Jade-3 A0A024R1A2 [Target identity:100%; Query identity:100%] PHD finger protein 16, isoform CRA_a Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000123 [histone acetyltransferase complex] GO:0005515 [protein binding] GO:0008270 [zinc ion binding] GO:0043966 [histone H3 acetylation] GO:0043981 [histone H4-K5 acetylation] GO:0043982 [histone H4-K8 acetylation] GO:0043983 [histone H4-K12 acetylation] Show all	823 aa 93.8 kDa	No	0
JADE3-002 ENSP00000391009 ENST00000424392	F2Z3N8 [Direct mapping] Protein Jade-3 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		186 aa 21.4 kDa	No	0
JADE3-003 ENSP00000400584 ENST00000455411	F2Z2B6 [Direct mapping] Protein Jade-3 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		114 aa 13.2 kDa	No	0
JADE3-201 ENSP00000479377 ENST00000611250	Q92613 [Direct mapping] Protein Jade-3 A0A024R1A2 [Target identity:100%; Query identity:100%] PHD finger protein 16, isoform CRA_a Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000123 [histone acetyltransferase complex] GO:0005515 [protein binding] GO:0008270 [zinc ion binding] GO:0043966 [histone H3 acetylation] GO:0043981 [histone H4-K5 acetylation] GO:0043982 [histone H4-K8 acetylation] GO:0043983 [histone H4-K12 acetylation] Show all	823 aa 93.8 kDa	No	0

Contact

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.