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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:9.3TPM
GTEx:5.5RPKM
FANTOM5:18.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody CAB069400

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

9.3
overview Male, age 54 Sample 1
TPM: 9.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 8.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 9.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 6.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 10.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 8.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 11
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 11.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.3
Samples: 149

Max RPKM: 7.7
Min RPKM: 2.4
Std RPKM: 0.9
Median RPKM: 5.2
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 7.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 7.5
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 7.2
GTEX-131XE-1026-SM-5EGKE 50-59 years, male 7.1
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 7.1
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 6.9
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 6.9
GTEX-1122O-1426-SM-5H11R 60-69 years, female 6.8
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 6.8
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 6.8
Show all
Colon - Transverse
RPKM: 5.6
Samples: 196

Max RPKM: 9.1
Min RPKM: 0.8
Std RPKM: 0.9
Median RPKM: 5.7
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 9.1
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 7.2
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 7.2
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 7.2
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 7.1
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 7.1
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 7.1
GTEX-1128S-1626-SM-5H12O 60-69 years, female 7.0
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 7.0
GTEX-ZPU1-1926-SM-57WDT 40-49 years, male 7.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

18.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 18.6
FF:10014-101C5 62,83,84 years, mixed 18.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.